Hb_001799_090

Information

Type -
Description -
Location Contig1799: 86276-87177
Sequence    

Annotation

kegg
ID rcu:RCOM_0658030
description Uclacyanin-2 precursor, putative
nr
ID XP_012083712.1
description PREDICTED: uclacyanin-2-like [Jatropha curcas]
swissprot
ID Q41001
description Blue copper protein OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067KAM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14640 PE=4 SV=1
Gene Ontology
ID GO:0009055
description plastocyanin-like domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17387: 86276-87124
cDNA
(Sanger)
(ID:Location)		 002_N10.ab1: 86276-87124 , 009_L11.ab1: 86278-87124 , 018_M11.ab1: 86276-87107 , 020_N14.ab1: 86278-87124 , 031_J11.ab1: 86276-86888

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_090 0.0 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
2 Hb_002289_110 0.0815651436 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
3 Hb_001998_260 0.0864347314 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001856_160 0.0891903658 - - conserved hypothetical protein [Ricinus communis]
5 Hb_028008_030 0.0940480839 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
6 Hb_000069_520 0.1119052559 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
7 Hb_005489_120 0.1200805644 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
8 Hb_005144_100 0.1207562138 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
9 Hb_000070_070 0.1218288492 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
10 Hb_029866_080 0.1229300301 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
11 Hb_039496_010 0.1297979006 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
12 Hb_003266_060 0.1299950761 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
13 Hb_005237_070 0.1322986829 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
14 Hb_001006_030 0.1336281653 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012787_050 0.1349310622 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
16 Hb_001564_090 0.1361508621 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005333_120 0.1372726552 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
18 Hb_130967_010 0.1385289401 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_000586_100 0.1386665466 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008001_020 0.1392042809 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]

Gene co-expression network

sample Hb_001799_090 Hb_001799_090 Hb_002289_110 Hb_002289_110 Hb_001799_090--Hb_002289_110 Hb_001998_260 Hb_001998_260 Hb_001799_090--Hb_001998_260 Hb_001856_160 Hb_001856_160 Hb_001799_090--Hb_001856_160 Hb_028008_030 Hb_028008_030 Hb_001799_090--Hb_028008_030 Hb_000069_520 Hb_000069_520 Hb_001799_090--Hb_000069_520 Hb_005489_120 Hb_005489_120 Hb_001799_090--Hb_005489_120 Hb_005237_070 Hb_005237_070 Hb_002289_110--Hb_005237_070 Hb_002289_110--Hb_001856_160 Hb_002289_110--Hb_001998_260 Hb_029866_080 Hb_029866_080 Hb_002289_110--Hb_029866_080 Hb_002289_110--Hb_028008_030 Hb_001998_260--Hb_028008_030 Hb_005144_100 Hb_005144_100 Hb_001998_260--Hb_005144_100 Hb_003266_060 Hb_003266_060 Hb_001998_260--Hb_003266_060 Hb_039496_010 Hb_039496_010 Hb_001998_260--Hb_039496_010 Hb_006153_130 Hb_006153_130 Hb_001856_160--Hb_006153_130 Hb_003376_300 Hb_003376_300 Hb_001856_160--Hb_003376_300 Hb_001856_160--Hb_005489_120 Hb_000454_200 Hb_000454_200 Hb_001856_160--Hb_000454_200 Hb_003805_080 Hb_003805_080 Hb_028008_030--Hb_003805_080 Hb_000230_160 Hb_000230_160 Hb_028008_030--Hb_000230_160 Hb_028008_030--Hb_039496_010 Hb_003967_010 Hb_003967_010 Hb_028008_030--Hb_003967_010 Hb_001006_030 Hb_001006_030 Hb_000069_520--Hb_001006_030 Hb_002028_160 Hb_002028_160 Hb_000069_520--Hb_002028_160 Hb_000676_170 Hb_000676_170 Hb_000069_520--Hb_000676_170 Hb_000069_520--Hb_002289_110 Hb_002374_060 Hb_002374_060 Hb_000069_520--Hb_002374_060 Hb_000300_170 Hb_000300_170 Hb_005489_120--Hb_000300_170 Hb_001053_110 Hb_001053_110 Hb_005489_120--Hb_001053_110 Hb_005489_120--Hb_000676_170 Hb_012787_050 Hb_012787_050 Hb_005489_120--Hb_012787_050 Hb_000022_280 Hb_000022_280 Hb_005489_120--Hb_000022_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.77682 2.0704 12.6631 0.283731 0.0720323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.6962 1.39761

CAGE analysis