Hb_003266_060

Information

Type -
Description -
Location Contig3266: 39865-41175
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05580g
description POPTRDRAFT_643329; hypothetical protein
nr
ID XP_011026191.1
description PREDICTED: basic 7S globulin-like [Populus euphratica]
swissprot
ID P13917
description Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2
trembl
ID B9GSQ3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05580g PE=4 SV=1
Gene Ontology
ID GO:0004190
description basic 7s globulin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003266_060 0.0 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
2 Hb_001998_260 0.1074838644 - - cytochrome P450, putative [Ricinus communis]
3 Hb_005144_100 0.1134669368 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
4 Hb_000676_170 0.116978339 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
5 Hb_001006_030 0.1231374908 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000069_520 0.1238826716 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
7 Hb_000417_350 0.1261586486 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005489_120 0.1284353837 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
9 Hb_003967_010 0.1284839477 - - cytochrome P450, putative [Ricinus communis]
10 Hb_001799_090 0.1299950761 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
11 Hb_000300_170 0.1304121879 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
12 Hb_028008_030 0.1330472173 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
13 Hb_039496_010 0.1350820438 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_008705_040 0.1383621447 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
15 Hb_001053_110 0.1415330509 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
16 Hb_000022_280 0.1455916998 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
17 Hb_001856_160 0.1458356439 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012516_030 0.1486194313 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
19 Hb_000479_230 0.1491652089 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
20 Hb_002217_210 0.1493930204 - - -

Gene co-expression network

sample Hb_003266_060 Hb_003266_060 Hb_001998_260 Hb_001998_260 Hb_003266_060--Hb_001998_260 Hb_005144_100 Hb_005144_100 Hb_003266_060--Hb_005144_100 Hb_000676_170 Hb_000676_170 Hb_003266_060--Hb_000676_170 Hb_001006_030 Hb_001006_030 Hb_003266_060--Hb_001006_030 Hb_000069_520 Hb_000069_520 Hb_003266_060--Hb_000069_520 Hb_000417_350 Hb_000417_350 Hb_003266_060--Hb_000417_350 Hb_001799_090 Hb_001799_090 Hb_001998_260--Hb_001799_090 Hb_028008_030 Hb_028008_030 Hb_001998_260--Hb_028008_030 Hb_001998_260--Hb_005144_100 Hb_002289_110 Hb_002289_110 Hb_001998_260--Hb_002289_110 Hb_039496_010 Hb_039496_010 Hb_001998_260--Hb_039496_010 Hb_002217_210 Hb_002217_210 Hb_005144_100--Hb_002217_210 Hb_008959_050 Hb_008959_050 Hb_005144_100--Hb_008959_050 Hb_004635_040 Hb_004635_040 Hb_005144_100--Hb_004635_040 Hb_005144_100--Hb_001799_090 Hb_002374_060 Hb_002374_060 Hb_000676_170--Hb_002374_060 Hb_005489_120 Hb_005489_120 Hb_000676_170--Hb_005489_120 Hb_000479_230 Hb_000479_230 Hb_000676_170--Hb_000479_230 Hb_000676_170--Hb_000069_520 Hb_003964_060 Hb_003964_060 Hb_000676_170--Hb_003964_060 Hb_001006_030--Hb_000069_520 Hb_001006_030--Hb_002374_060 Hb_003967_010 Hb_003967_010 Hb_001006_030--Hb_003967_010 Hb_001006_030--Hb_002289_110 Hb_001006_030--Hb_000676_170 Hb_002028_160 Hb_002028_160 Hb_000069_520--Hb_002028_160 Hb_000069_520--Hb_001799_090 Hb_000069_520--Hb_002289_110 Hb_000069_520--Hb_002374_060 Hb_009711_040 Hb_009711_040 Hb_000417_350--Hb_009711_040 Hb_129637_010 Hb_129637_010 Hb_000417_350--Hb_129637_010 Hb_001053_110 Hb_001053_110 Hb_000417_350--Hb_001053_110 Hb_005333_120 Hb_005333_120 Hb_000417_350--Hb_005333_120 Hb_000306_050 Hb_000306_050 Hb_000417_350--Hb_000306_050 Hb_003171_070 Hb_003171_070 Hb_000417_350--Hb_003171_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.542463 0.297082 1.1267 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.028735 0 1.25275 0.0597467

CAGE analysis