Hb_001006_030

Information

Type -
Description -
Location Contig1006: 27943-29067
Sequence    

Annotation

kegg
ID rcu:RCOM_0774580
description hypothetical protein
nr
ID XP_002521862.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S793
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0774580 PE=4 SV=1
Gene Ontology
ID GO:0005886
description calmodulin-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00382: 27759-27990 , PASA_asmbl_00384: 28945-29111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000069_520 0.1066185976 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
3 Hb_002374_060 0.1174117542 - - amino acid transporter, putative [Ricinus communis]
4 Hb_003967_010 0.1206846822 - - cytochrome P450, putative [Ricinus communis]
5 Hb_003266_060 0.1231374908 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
6 Hb_002289_110 0.1250227245 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
7 Hb_000676_170 0.1260204746 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
8 Hb_001998_260 0.1277975504 - - cytochrome P450, putative [Ricinus communis]
9 Hb_156696_010 0.130675424 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
10 Hb_028008_030 0.1307029566 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
11 Hb_001799_090 0.1336281653 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
12 Hb_005489_120 0.1376412863 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
13 Hb_010162_010 0.1406739131 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
14 Hb_002461_070 0.148148265 - - gibberellin 2-oxidase, putative [Ricinus communis]
15 Hb_002028_160 0.1505921607 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
16 Hb_029866_080 0.1509679101 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
17 Hb_001856_160 0.1514035985 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005144_100 0.1515083499 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
19 Hb_039496_010 0.1575856765 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
20 Hb_001493_170 0.1578804303 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]

Gene co-expression network

sample Hb_001006_030 Hb_001006_030 Hb_000069_520 Hb_000069_520 Hb_001006_030--Hb_000069_520 Hb_002374_060 Hb_002374_060 Hb_001006_030--Hb_002374_060 Hb_003967_010 Hb_003967_010 Hb_001006_030--Hb_003967_010 Hb_003266_060 Hb_003266_060 Hb_001006_030--Hb_003266_060 Hb_002289_110 Hb_002289_110 Hb_001006_030--Hb_002289_110 Hb_000676_170 Hb_000676_170 Hb_001006_030--Hb_000676_170 Hb_002028_160 Hb_002028_160 Hb_000069_520--Hb_002028_160 Hb_001799_090 Hb_001799_090 Hb_000069_520--Hb_001799_090 Hb_000069_520--Hb_000676_170 Hb_000069_520--Hb_002289_110 Hb_000069_520--Hb_002374_060 Hb_002374_060--Hb_000676_170 Hb_010162_010 Hb_010162_010 Hb_002374_060--Hb_010162_010 Hb_016120_020 Hb_016120_020 Hb_002374_060--Hb_016120_020 Hb_000856_250 Hb_000856_250 Hb_002374_060--Hb_000856_250 Hb_028008_030 Hb_028008_030 Hb_003967_010--Hb_028008_030 Hb_000230_160 Hb_000230_160 Hb_003967_010--Hb_000230_160 Hb_003967_010--Hb_003266_060 Hb_001493_170 Hb_001493_170 Hb_003967_010--Hb_001493_170 Hb_005333_120 Hb_005333_120 Hb_003967_010--Hb_005333_120 Hb_001998_260 Hb_001998_260 Hb_003266_060--Hb_001998_260 Hb_005144_100 Hb_005144_100 Hb_003266_060--Hb_005144_100 Hb_003266_060--Hb_000676_170 Hb_003266_060--Hb_000069_520 Hb_000417_350 Hb_000417_350 Hb_003266_060--Hb_000417_350 Hb_002289_110--Hb_001799_090 Hb_005237_070 Hb_005237_070 Hb_002289_110--Hb_005237_070 Hb_001856_160 Hb_001856_160 Hb_002289_110--Hb_001856_160 Hb_002289_110--Hb_001998_260 Hb_029866_080 Hb_029866_080 Hb_002289_110--Hb_029866_080 Hb_002289_110--Hb_028008_030 Hb_005489_120 Hb_005489_120 Hb_000676_170--Hb_005489_120 Hb_000479_230 Hb_000479_230 Hb_000676_170--Hb_000479_230 Hb_003964_060 Hb_003964_060 Hb_000676_170--Hb_003964_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0431177 4.20664 1.21021 7.18516 0.0192345 0.0204574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0876991 0.206946 0.255766 7.29059 0.568901

CAGE analysis