Hb_000856_250

Information

Type -
Description -
Location Contig856: 233438-234241
Sequence    

Annotation

kegg
ID rcu:RCOM_1513550
description short chain alcohol dehydrogenase, putative (EC:1.1.1.53)
nr
ID XP_002511516.1
description short chain alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q5C9I9
description (-)-isopiperitenol/(-)-carveol dehydrogenase, mitochondrial OS=Mentha piperita PE=1 SV=1
trembl
ID B9R941
description Short chain alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_1513550 PE=3 SV=1
Gene Ontology
ID GO:0047044
description (-)-isopiperitenol (-)-carveol mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_250 0.0 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_000032_340 0.0835426341 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
3 Hb_016120_020 0.0966303199 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
4 Hb_000070_070 0.1086438811 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
5 Hb_010417_090 0.1145702892 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
6 Hb_000203_150 0.1214012238 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
7 Hb_002236_010 0.1251910441 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
8 Hb_001610_060 0.1276952169 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
9 Hb_003964_060 0.1318970373 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
10 Hb_003504_010 0.1324708117 - - hypothetical protein POPTR_0013s04290g [Populus trichocarpa]
11 Hb_002374_060 0.135273116 - - amino acid transporter, putative [Ricinus communis]
12 Hb_000571_060 0.1358356706 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
13 Hb_135720_010 0.138726085 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
14 Hb_002592_070 0.1393476797 - - hypothetical protein VITISV_020993 [Vitis vinifera]
15 Hb_002811_110 0.142313037 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
16 Hb_000069_520 0.144445396 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
17 Hb_000115_290 0.1458489358 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
18 Hb_002025_050 0.1474578657 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032260_130 0.1480433819 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
20 Hb_003304_090 0.1510825091 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]

Gene co-expression network

sample Hb_000856_250 Hb_000856_250 Hb_000032_340 Hb_000032_340 Hb_000856_250--Hb_000032_340 Hb_016120_020 Hb_016120_020 Hb_000856_250--Hb_016120_020 Hb_000070_070 Hb_000070_070 Hb_000856_250--Hb_000070_070 Hb_010417_090 Hb_010417_090 Hb_000856_250--Hb_010417_090 Hb_000203_150 Hb_000203_150 Hb_000856_250--Hb_000203_150 Hb_002236_010 Hb_002236_010 Hb_000856_250--Hb_002236_010 Hb_000032_340--Hb_000203_150 Hb_001610_060 Hb_001610_060 Hb_000032_340--Hb_001610_060 Hb_000069_520 Hb_000069_520 Hb_000032_340--Hb_000069_520 Hb_000032_340--Hb_010417_090 Hb_183209_020 Hb_183209_020 Hb_000032_340--Hb_183209_020 Hb_003504_010 Hb_003504_010 Hb_016120_020--Hb_003504_010 Hb_016120_020--Hb_001610_060 Hb_001115_010 Hb_001115_010 Hb_016120_020--Hb_001115_010 Hb_002374_060 Hb_002374_060 Hb_016120_020--Hb_002374_060 Hb_016120_020--Hb_000032_340 Hb_012787_050 Hb_012787_050 Hb_000070_070--Hb_012787_050 Hb_000070_070--Hb_002236_010 Hb_023956_010 Hb_023956_010 Hb_000070_070--Hb_023956_010 Hb_000070_070--Hb_010417_090 Hb_003964_060 Hb_003964_060 Hb_000070_070--Hb_003964_060 Hb_002553_070 Hb_002553_070 Hb_000070_070--Hb_002553_070 Hb_000115_290 Hb_000115_290 Hb_010417_090--Hb_000115_290 Hb_002970_070 Hb_002970_070 Hb_010417_090--Hb_002970_070 Hb_000994_100 Hb_000994_100 Hb_010417_090--Hb_000994_100 Hb_010417_090--Hb_002236_010 Hb_001013_060 Hb_001013_060 Hb_000203_150--Hb_001013_060 Hb_000203_150--Hb_001610_060 Hb_000002_230 Hb_000002_230 Hb_000203_150--Hb_000002_230 Hb_000720_060 Hb_000720_060 Hb_000203_150--Hb_000720_060 Hb_000203_150--Hb_183209_020 Hb_002236_010--Hb_002553_070 Hb_005679_120 Hb_005679_120 Hb_002236_010--Hb_005679_120 Hb_002236_010--Hb_023956_010 Hb_000571_060 Hb_000571_060 Hb_002236_010--Hb_000571_060 Hb_007625_030 Hb_007625_030 Hb_002236_010--Hb_007625_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 35.3644 14.0532 121.451 0 0.0352072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134083 0.73801 0.381597 46.6133 15.1396

CAGE analysis