Hb_000571_060

Information

Type -
Description -
Location Contig571: 63352-63648
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10380g
description POPTRDRAFT_560938; hypothetical protein
nr
ID XP_012089800.1
description PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJ67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000571_060 0.0 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
2 Hb_002811_110 0.0514907411 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
3 Hb_002236_010 0.0914922077 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
4 Hb_002553_070 0.096170422 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
5 Hb_000181_260 0.0967094303 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
6 Hb_007237_080 0.0979508873 - - amino acid transporter, putative [Ricinus communis]
7 Hb_008725_020 0.1002249363 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
8 Hb_012787_060 0.1071781583 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
9 Hb_008021_040 0.1079080694 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
10 Hb_002897_030 0.1081688178 - - PREDICTED: methylesterase 17 [Jatropha curcas]
11 Hb_043789_010 0.1085931157 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
12 Hb_000162_070 0.1099420758 - - phospholipase C, putative [Ricinus communis]
13 Hb_005679_120 0.1105546409 - - hypothetical protein RCOM_0284080 [Ricinus communis]
14 Hb_001117_180 0.1116636338 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
15 Hb_002522_040 0.1162772277 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
16 Hb_004659_100 0.1171473863 - - conserved hypothetical protein [Ricinus communis]
17 Hb_189208_050 0.1172102394 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
18 Hb_001048_070 0.1207846757 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
19 Hb_002592_070 0.1229279738 - - hypothetical protein VITISV_020993 [Vitis vinifera]
20 Hb_002641_140 0.1237783546 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_000571_060 Hb_000571_060 Hb_002811_110 Hb_002811_110 Hb_000571_060--Hb_002811_110 Hb_002236_010 Hb_002236_010 Hb_000571_060--Hb_002236_010 Hb_002553_070 Hb_002553_070 Hb_000571_060--Hb_002553_070 Hb_000181_260 Hb_000181_260 Hb_000571_060--Hb_000181_260 Hb_007237_080 Hb_007237_080 Hb_000571_060--Hb_007237_080 Hb_008725_020 Hb_008725_020 Hb_000571_060--Hb_008725_020 Hb_002811_110--Hb_000181_260 Hb_001117_180 Hb_001117_180 Hb_002811_110--Hb_001117_180 Hb_000162_070 Hb_000162_070 Hb_002811_110--Hb_000162_070 Hb_002811_110--Hb_007237_080 Hb_008021_040 Hb_008021_040 Hb_002811_110--Hb_008021_040 Hb_002236_010--Hb_002553_070 Hb_000070_070 Hb_000070_070 Hb_002236_010--Hb_000070_070 Hb_005679_120 Hb_005679_120 Hb_002236_010--Hb_005679_120 Hb_023956_010 Hb_023956_010 Hb_002236_010--Hb_023956_010 Hb_007625_030 Hb_007625_030 Hb_002236_010--Hb_007625_030 Hb_002553_070--Hb_023956_010 Hb_019026_050 Hb_019026_050 Hb_002553_070--Hb_019026_050 Hb_002553_070--Hb_005679_120 Hb_006846_030 Hb_006846_030 Hb_002553_070--Hb_006846_030 Hb_139461_010 Hb_139461_010 Hb_000181_260--Hb_139461_010 Hb_000120_320 Hb_000120_320 Hb_000181_260--Hb_000120_320 Hb_000181_260--Hb_008021_040 Hb_000181_260--Hb_002553_070 Hb_026144_040 Hb_026144_040 Hb_007237_080--Hb_026144_040 Hb_002370_050 Hb_002370_050 Hb_007237_080--Hb_002370_050 Hb_007237_080--Hb_000162_070 Hb_001269_400 Hb_001269_400 Hb_007237_080--Hb_001269_400 Hb_002325_050 Hb_002325_050 Hb_008725_020--Hb_002325_050 Hb_003849_200 Hb_003849_200 Hb_008725_020--Hb_003849_200 Hb_001562_030 Hb_001562_030 Hb_008725_020--Hb_001562_030 Hb_001013_080 Hb_001013_080 Hb_008725_020--Hb_001013_080 Hb_001198_180 Hb_001198_180 Hb_008725_020--Hb_001198_180 Hb_000991_080 Hb_000991_080 Hb_008725_020--Hb_000991_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.91622 4.37261 15.4088 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.20126 3.25047

CAGE analysis