Hb_139461_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig139461: 36-506
Sequence    

Annotation

kegg
ID tcc:TCM_019825
description Cc-nbs-lrr resistance protein, putative
nr
ID XP_007033676.1
description Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A061EJN2
description Cc-nbs-lrr resistance protein, putative OS=Theobroma cacao GN=TCM_019825 PE=4 SV=1
Gene Ontology
ID GO:0032550
description cc-nbs-lrr resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139461_010 0.0 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
2 Hb_008021_040 0.0847100934 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
3 Hb_000181_260 0.0919176519 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
4 Hb_043789_010 0.0980334531 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
5 Hb_002811_110 0.1093777308 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
6 Hb_009838_120 0.1125495075 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
7 Hb_001048_070 0.1238830877 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
8 Hb_029142_040 0.1268902044 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
9 Hb_007625_030 0.1293654958 - - unknown [Medicago truncatula]
10 Hb_155444_010 0.1305554525 - - -
11 Hb_000685_020 0.1308891827 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
12 Hb_135720_010 0.1322334748 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
13 Hb_002518_020 0.133273309 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
14 Hb_000571_060 0.1356860743 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
15 Hb_024868_010 0.135817033 - - protein kinase, putative [Ricinus communis]
16 Hb_136033_010 0.1360559115 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Gossypium raimondii]
17 Hb_001728_130 0.1373794409 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_004659_100 0.1384752411 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002685_160 0.1393055671 - - leucine-rich repeat protein, putative [Ricinus communis]
20 Hb_002641_140 0.1400022979 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_139461_010 Hb_139461_010 Hb_008021_040 Hb_008021_040 Hb_139461_010--Hb_008021_040 Hb_000181_260 Hb_000181_260 Hb_139461_010--Hb_000181_260 Hb_043789_010 Hb_043789_010 Hb_139461_010--Hb_043789_010 Hb_002811_110 Hb_002811_110 Hb_139461_010--Hb_002811_110 Hb_009838_120 Hb_009838_120 Hb_139461_010--Hb_009838_120 Hb_001048_070 Hb_001048_070 Hb_139461_010--Hb_001048_070 Hb_002641_140 Hb_002641_140 Hb_008021_040--Hb_002641_140 Hb_189208_050 Hb_189208_050 Hb_008021_040--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_008021_040--Hb_024868_010 Hb_008021_040--Hb_001048_070 Hb_029142_040 Hb_029142_040 Hb_008021_040--Hb_029142_040 Hb_000181_260--Hb_002811_110 Hb_000571_060 Hb_000571_060 Hb_000181_260--Hb_000571_060 Hb_000120_320 Hb_000120_320 Hb_000181_260--Hb_000120_320 Hb_000181_260--Hb_008021_040 Hb_002553_070 Hb_002553_070 Hb_000181_260--Hb_002553_070 Hb_043789_010--Hb_002811_110 Hb_043789_010--Hb_008021_040 Hb_004659_100 Hb_004659_100 Hb_043789_010--Hb_004659_100 Hb_043789_010--Hb_000571_060 Hb_043789_010--Hb_001048_070 Hb_002811_110--Hb_000571_060 Hb_001117_180 Hb_001117_180 Hb_002811_110--Hb_001117_180 Hb_000162_070 Hb_000162_070 Hb_002811_110--Hb_000162_070 Hb_007237_080 Hb_007237_080 Hb_002811_110--Hb_007237_080 Hb_002811_110--Hb_008021_040 Hb_009627_020 Hb_009627_020 Hb_009838_120--Hb_009627_020 Hb_009838_120--Hb_024868_010 Hb_009838_120--Hb_004659_100 Hb_009838_120--Hb_008021_040 Hb_005679_120 Hb_005679_120 Hb_009838_120--Hb_005679_120 Hb_012787_060 Hb_012787_060 Hb_001048_070--Hb_012787_060 Hb_003849_200 Hb_003849_200 Hb_001048_070--Hb_003849_200 Hb_002888_100 Hb_002888_100 Hb_001048_070--Hb_002888_100 Hb_001048_070--Hb_002641_140 Hb_000342_020 Hb_000342_020 Hb_001048_070--Hb_000342_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.451142 5.09078 4.29644 14.915 0.369554 0.373102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.70174 3.43637

CAGE analysis