Hb_000162_070

Information

Type -
Description -
Location Contig162: 96816-97772
Sequence    

Annotation

kegg
ID rcu:RCOM_0739740
description phospholipase C, putative
nr
ID XP_002528284.1
description phospholipase C, putative [Ricinus communis]
swissprot
ID P34024
description 1-phosphatidylinositol phosphodiesterase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=plcA PE=1 SV=1
trembl
ID B9SQL5
description Phospholipase C, putative OS=Ricinus communis GN=RCOM_0739740 PE=4 SV=1
Gene Ontology
ID GO:0008081
description pi-plc x-box domain-containing protein ddb_g0293730-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14572: 96751-98018
cDNA
(Sanger)
(ID:Location)		 017_C22.ab1: 96763-97255 , 023_G05.ab1: 96758-97471

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_070 0.0 - - phospholipase C, putative [Ricinus communis]
2 Hb_026144_040 0.0672082393 - - -
3 Hb_008598_010 0.0798723356 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
4 Hb_007237_080 0.08369774 - - amino acid transporter, putative [Ricinus communis]
5 Hb_000045_080 0.0847898353 - - amino acid transporter, putative [Ricinus communis]
6 Hb_000991_080 0.085352426 - - kinase, putative [Ricinus communis]
7 Hb_002811_110 0.0857562988 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
8 Hb_000384_020 0.0860921044 - - sucrose phosphate syntase, putative [Ricinus communis]
9 Hb_001013_080 0.0870020012 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
10 Hb_002598_020 0.092983808 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
11 Hb_001117_180 0.0937709907 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
12 Hb_014361_040 0.0962444567 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
13 Hb_002151_020 0.0988232793 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
14 Hb_008725_020 0.1026107386 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
15 Hb_000571_060 0.1099420758 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
16 Hb_173107_020 0.1100833173 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
17 Hb_000342_020 0.1105448138 - - bel1 homeotic protein, putative [Ricinus communis]
18 Hb_002902_040 0.1115234165 - - PREDICTED: peroxidase 51 [Jatropha curcas]
19 Hb_144703_010 0.1126043466 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
20 Hb_001269_400 0.1127907381 - - cinnamoyl-CoA reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000162_070 Hb_000162_070 Hb_026144_040 Hb_026144_040 Hb_000162_070--Hb_026144_040 Hb_008598_010 Hb_008598_010 Hb_000162_070--Hb_008598_010 Hb_007237_080 Hb_007237_080 Hb_000162_070--Hb_007237_080 Hb_000045_080 Hb_000045_080 Hb_000162_070--Hb_000045_080 Hb_000991_080 Hb_000991_080 Hb_000162_070--Hb_000991_080 Hb_002811_110 Hb_002811_110 Hb_000162_070--Hb_002811_110 Hb_026144_040--Hb_007237_080 Hb_026144_040--Hb_008598_010 Hb_026144_040--Hb_000045_080 Hb_002598_020 Hb_002598_020 Hb_026144_040--Hb_002598_020 Hb_002151_020 Hb_002151_020 Hb_026144_040--Hb_002151_020 Hb_008598_010--Hb_000045_080 Hb_008598_010--Hb_002151_020 Hb_144703_010 Hb_144703_010 Hb_008598_010--Hb_144703_010 Hb_000069_540 Hb_000069_540 Hb_008598_010--Hb_000069_540 Hb_002370_050 Hb_002370_050 Hb_007237_080--Hb_002370_050 Hb_001269_400 Hb_001269_400 Hb_007237_080--Hb_001269_400 Hb_007237_080--Hb_002811_110 Hb_000571_060 Hb_000571_060 Hb_007237_080--Hb_000571_060 Hb_017862_030 Hb_017862_030 Hb_000045_080--Hb_017862_030 Hb_000045_080--Hb_002151_020 Hb_000384_020 Hb_000384_020 Hb_000045_080--Hb_000384_020 Hb_001013_080 Hb_001013_080 Hb_000991_080--Hb_001013_080 Hb_000991_080--Hb_000384_020 Hb_173107_020 Hb_173107_020 Hb_000991_080--Hb_173107_020 Hb_003435_040 Hb_003435_040 Hb_000991_080--Hb_003435_040 Hb_114733_010 Hb_114733_010 Hb_000991_080--Hb_114733_010 Hb_002811_110--Hb_000571_060 Hb_000181_260 Hb_000181_260 Hb_002811_110--Hb_000181_260 Hb_001117_180 Hb_001117_180 Hb_002811_110--Hb_001117_180 Hb_008021_040 Hb_008021_040 Hb_002811_110--Hb_008021_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.742175 97.0855 54.8909 196.212 0.387674 0.484803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0535436 0.0842201 0 49.3674 73.4161

CAGE analysis