Hb_008021_040

Information

Type -
Description -
Location Contig8021: 43366-46611
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01260g
description POPTRDRAFT_572000; hypothetical protein
nr
ID XP_012079449.1
description PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
swissprot
ID Q38914
description AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2
trembl
ID A0A067KAR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12574 PE=4 SV=1
Gene Ontology
ID GO:0008152
description ap2-like ethylene-responsive transcription factor ant

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58858: 43368-46377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008021_040 0.0 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
2 Hb_002641_140 0.0664698396 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_139461_010 0.0847100934 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
4 Hb_189208_050 0.085494839 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
5 Hb_024868_010 0.0890131156 - - protein kinase, putative [Ricinus communis]
6 Hb_001048_070 0.0933828047 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
7 Hb_029142_040 0.0946121279 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
8 Hb_002811_110 0.0950194678 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
9 Hb_000631_100 0.0967205138 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
10 Hb_009838_120 0.0987761344 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
11 Hb_000181_260 0.0993758719 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
12 Hb_004659_100 0.1033978947 - - conserved hypothetical protein [Ricinus communis]
13 Hb_043789_010 0.1057445489 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
14 Hb_000571_060 0.1079080694 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
15 Hb_087427_010 0.1084005822 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
16 Hb_001138_070 0.115030117 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
17 Hb_012787_060 0.1157373701 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
18 Hb_005357_120 0.1167699974 transcription factor TF Family: MYB-related -
19 Hb_000098_260 0.1170832004 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_000120_320 0.1172427029 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_008021_040 Hb_008021_040 Hb_002641_140 Hb_002641_140 Hb_008021_040--Hb_002641_140 Hb_139461_010 Hb_139461_010 Hb_008021_040--Hb_139461_010 Hb_189208_050 Hb_189208_050 Hb_008021_040--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_008021_040--Hb_024868_010 Hb_001048_070 Hb_001048_070 Hb_008021_040--Hb_001048_070 Hb_029142_040 Hb_029142_040 Hb_008021_040--Hb_029142_040 Hb_000411_020 Hb_000411_020 Hb_002641_140--Hb_000411_020 Hb_002641_140--Hb_189208_050 Hb_000098_260 Hb_000098_260 Hb_002641_140--Hb_000098_260 Hb_005357_120 Hb_005357_120 Hb_002641_140--Hb_005357_120 Hb_012787_060 Hb_012787_060 Hb_002641_140--Hb_012787_060 Hb_000181_260 Hb_000181_260 Hb_139461_010--Hb_000181_260 Hb_043789_010 Hb_043789_010 Hb_139461_010--Hb_043789_010 Hb_002811_110 Hb_002811_110 Hb_139461_010--Hb_002811_110 Hb_009838_120 Hb_009838_120 Hb_139461_010--Hb_009838_120 Hb_139461_010--Hb_001048_070 Hb_003216_140 Hb_003216_140 Hb_189208_050--Hb_003216_140 Hb_189208_050--Hb_000411_020 Hb_000631_100 Hb_000631_100 Hb_189208_050--Hb_000631_100 Hb_001247_090 Hb_001247_090 Hb_189208_050--Hb_001247_090 Hb_189208_050--Hb_024868_010 Hb_024868_010--Hb_009838_120 Hb_001645_030 Hb_001645_030 Hb_024868_010--Hb_001645_030 Hb_024868_010--Hb_000631_100 Hb_009627_020 Hb_009627_020 Hb_024868_010--Hb_009627_020 Hb_024868_010--Hb_003216_140 Hb_001048_070--Hb_012787_060 Hb_003849_200 Hb_003849_200 Hb_001048_070--Hb_003849_200 Hb_002888_100 Hb_002888_100 Hb_001048_070--Hb_002888_100 Hb_001048_070--Hb_002641_140 Hb_000342_020 Hb_000342_020 Hb_001048_070--Hb_000342_020 Hb_155444_010 Hb_155444_010 Hb_029142_040--Hb_155444_010 Hb_001138_070 Hb_001138_070 Hb_029142_040--Hb_001138_070 Hb_000645_160 Hb_000645_160 Hb_029142_040--Hb_000645_160 Hb_002518_020 Hb_002518_020 Hb_029142_040--Hb_002518_020 Hb_012395_050 Hb_012395_050 Hb_029142_040--Hb_012395_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12943 3.14596 3.87223 9.11684 0.131678 0.049426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.66076 1.99969

CAGE analysis