Hb_001138_070

Information

Type -
Description -
Location Contig1138: 100041-102758
Sequence    

Annotation

kegg
ID rcu:RCOM_0811570
description d-3-phosphoglycerate dehydrogenase, putative (EC:1.1.1.95)
nr
ID XP_012067521.1
description PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID O49485
description D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=PGDH1 PE=1 SV=1
trembl
ID A0A067LIC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22139 PE=3 SV=1
Gene Ontology
ID GO:0005739
description d-3-phosphoglycerate dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04131: 99831-102721 , PASA_asmbl_04132: 101720-101908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001138_070 0.0 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
2 Hb_149055_010 0.0764219846 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
3 Hb_008175_050 0.0828731319 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
4 Hb_000645_160 0.0931865663 - - protein translocase, putative [Ricinus communis]
5 Hb_003656_090 0.093308835 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
6 Hb_000329_010 0.0942415106 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
7 Hb_002641_140 0.0963157477 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_029142_040 0.0967288747 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
9 Hb_009189_100 0.0969461433 - - PREDICTED: patellin-6 [Jatropha curcas]
10 Hb_000120_320 0.1026571532 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001677_090 0.1084463071 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
12 Hb_001269_400 0.1112968868 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
13 Hb_000011_370 0.1132886789 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
14 Hb_001769_070 0.1134939847 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
15 Hb_008021_040 0.115030117 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
16 Hb_002809_080 0.1162352085 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001597_030 0.1166918574 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
18 Hb_000997_240 0.1178894286 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
19 Hb_001348_010 0.1178978726 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
20 Hb_015934_080 0.1193312757 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_001138_070 Hb_001138_070 Hb_149055_010 Hb_149055_010 Hb_001138_070--Hb_149055_010 Hb_008175_050 Hb_008175_050 Hb_001138_070--Hb_008175_050 Hb_000645_160 Hb_000645_160 Hb_001138_070--Hb_000645_160 Hb_003656_090 Hb_003656_090 Hb_001138_070--Hb_003656_090 Hb_000329_010 Hb_000329_010 Hb_001138_070--Hb_000329_010 Hb_002641_140 Hb_002641_140 Hb_001138_070--Hb_002641_140 Hb_001269_400 Hb_001269_400 Hb_149055_010--Hb_001269_400 Hb_149055_010--Hb_000329_010 Hb_002809_080 Hb_002809_080 Hb_149055_010--Hb_002809_080 Hb_149055_010--Hb_000645_160 Hb_000120_320 Hb_000120_320 Hb_149055_010--Hb_000120_320 Hb_008175_050--Hb_003656_090 Hb_007017_100 Hb_007017_100 Hb_008175_050--Hb_007017_100 Hb_005731_070 Hb_005731_070 Hb_008175_050--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_008175_050--Hb_007386_030 Hb_015001_030 Hb_015001_030 Hb_008175_050--Hb_015001_030 Hb_000742_130 Hb_000742_130 Hb_000645_160--Hb_000742_130 Hb_032920_030 Hb_032920_030 Hb_000645_160--Hb_032920_030 Hb_001936_180 Hb_001936_180 Hb_000645_160--Hb_001936_180 Hb_000098_260 Hb_000098_260 Hb_000645_160--Hb_000098_260 Hb_001440_010 Hb_001440_010 Hb_003656_090--Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_003656_090--Hb_000834_220 Hb_003656_090--Hb_015001_030 Hb_001141_160 Hb_001141_160 Hb_003656_090--Hb_001141_160 Hb_000329_010--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_000329_010--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_000329_010--Hb_001769_070 Hb_031224_010 Hb_031224_010 Hb_000329_010--Hb_031224_010 Hb_000419_140 Hb_000419_140 Hb_000329_010--Hb_000419_140 Hb_008021_040 Hb_008021_040 Hb_002641_140--Hb_008021_040 Hb_000411_020 Hb_000411_020 Hb_002641_140--Hb_000411_020 Hb_189208_050 Hb_189208_050 Hb_002641_140--Hb_189208_050 Hb_002641_140--Hb_000098_260 Hb_005357_120 Hb_005357_120 Hb_002641_140--Hb_005357_120 Hb_012787_060 Hb_012787_060 Hb_002641_140--Hb_012787_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47459 24.2301 64.3885 130.558 0.666682 0.924155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.482325 0.120754 0.0982053 52.4548 43.2338

CAGE analysis