Hb_002809_080

Information

Type -
Description -
Location Contig2809: 63514-65150
Sequence    

Annotation

kegg
ID rcu:RCOM_1682530
description hypothetical protein
nr
ID XP_002509680.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O82741
description Protein STAY-GREEN 1, chloroplastic OS=Arabidopsis thaliana GN=SGR1 PE=1 SV=1
trembl
ID B9RBZ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1682530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29330: 63689-65134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002809_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000329_010 0.054458695 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
3 Hb_002370_050 0.0823573955 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
4 Hb_000076_280 0.086090142 - - PREDICTED: pectinesterase-like [Populus euphratica]
5 Hb_005000_280 0.0870878848 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
6 Hb_149055_010 0.0932641781 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
7 Hb_031224_010 0.0937783066 - - -
8 Hb_000419_140 0.0949555608 - - Aquaporin PIP2.1, putative [Ricinus communis]
9 Hb_002203_020 0.100189736 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001769_070 0.1019059522 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
11 Hb_027400_020 0.1059863116 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
12 Hb_007659_050 0.1067866083 - - PREDICTED: xylogen-like protein 11 [Jatropha curcas]
13 Hb_002518_020 0.1112113204 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
14 Hb_003633_170 0.1117206336 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000103_300 0.1118977429 - - PREDICTED: perakine reductase-like [Jatropha curcas]
16 Hb_178049_010 0.1120124721 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
17 Hb_001138_070 0.1162352085 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
18 Hb_007237_080 0.116480052 - - amino acid transporter, putative [Ricinus communis]
19 Hb_001269_400 0.1185488713 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
20 Hb_003376_140 0.1203811911 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]

Gene co-expression network

sample Hb_002809_080 Hb_002809_080 Hb_000329_010 Hb_000329_010 Hb_002809_080--Hb_000329_010 Hb_002370_050 Hb_002370_050 Hb_002809_080--Hb_002370_050 Hb_000076_280 Hb_000076_280 Hb_002809_080--Hb_000076_280 Hb_005000_280 Hb_005000_280 Hb_002809_080--Hb_005000_280 Hb_149055_010 Hb_149055_010 Hb_002809_080--Hb_149055_010 Hb_031224_010 Hb_031224_010 Hb_002809_080--Hb_031224_010 Hb_000329_010--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_000329_010--Hb_001769_070 Hb_000329_010--Hb_031224_010 Hb_000329_010--Hb_149055_010 Hb_000419_140 Hb_000419_140 Hb_000329_010--Hb_000419_140 Hb_007237_080 Hb_007237_080 Hb_002370_050--Hb_007237_080 Hb_002370_050--Hb_031224_010 Hb_002370_050--Hb_000329_010 Hb_027405_010 Hb_027405_010 Hb_002370_050--Hb_027405_010 Hb_026144_040 Hb_026144_040 Hb_002370_050--Hb_026144_040 Hb_027400_020 Hb_027400_020 Hb_000076_280--Hb_027400_020 Hb_000076_280--Hb_001769_070 Hb_000076_280--Hb_000419_140 Hb_002616_020 Hb_002616_020 Hb_000076_280--Hb_002616_020 Hb_002518_020 Hb_002518_020 Hb_005000_280--Hb_002518_020 Hb_005000_280--Hb_001769_070 Hb_005000_280--Hb_000076_280 Hb_005000_280--Hb_000329_010 Hb_005000_280--Hb_027400_020 Hb_001269_400 Hb_001269_400 Hb_149055_010--Hb_001269_400 Hb_001138_070 Hb_001138_070 Hb_149055_010--Hb_001138_070 Hb_000645_160 Hb_000645_160 Hb_149055_010--Hb_000645_160 Hb_000120_320 Hb_000120_320 Hb_149055_010--Hb_000120_320 Hb_003633_170 Hb_003633_170 Hb_031224_010--Hb_003633_170 Hb_002566_020 Hb_002566_020 Hb_031224_010--Hb_002566_020 Hb_007370_010 Hb_007370_010 Hb_031224_010--Hb_007370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0207979 2.58413 4.15754 15.7137 0.0403519 0.0226117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0951876 0.0374341 0.0691251 4.10487 5.14898

CAGE analysis