Hb_000329_010

Information

Type -
Description -
Location Contig329: 7490-11282
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14800g
description POPTRDRAFT_644329; hypothetical protein
nr
ID XP_012083586.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
swissprot
ID Q9LYN8
description Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana GN=EMS1 PE=1 SV=1
trembl
ID A0A067K171
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14534 PE=4 SV=1
Gene Ontology
ID GO:0016021
description leucine rich repeat receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34476: 7490-11270 , PASA_asmbl_34477: 9980-10373 , PASA_asmbl_34478: 8314-8481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
2 Hb_002809_080 0.054458695 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000076_280 0.0661337361 - - PREDICTED: pectinesterase-like [Populus euphratica]
4 Hb_001769_070 0.0749914449 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
5 Hb_031224_010 0.0797935133 - - -
6 Hb_149055_010 0.0839868521 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
7 Hb_000419_140 0.0840583052 - - Aquaporin PIP2.1, putative [Ricinus communis]
8 Hb_027400_020 0.0878475333 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
9 Hb_002370_050 0.094085172 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
10 Hb_001138_070 0.0942415106 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
11 Hb_001777_010 0.0954090725 - - -
12 Hb_005000_280 0.0966218023 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
13 Hb_002518_020 0.1010294548 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
14 Hb_003633_170 0.1039475587 - - conserved hypothetical protein [Ricinus communis]
15 Hb_178049_010 0.1135258277 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
16 Hb_000462_190 0.1159055702 - - PREDICTED: thaumatin-like protein 1 [Jatropha curcas]
17 Hb_002171_020 0.1162036002 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
18 Hb_002566_020 0.118682575 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
19 Hb_002203_020 0.1188008233 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000834_130 0.1200372877 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000329_010 Hb_000329_010 Hb_002809_080 Hb_002809_080 Hb_000329_010--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_000329_010--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_000329_010--Hb_001769_070 Hb_031224_010 Hb_031224_010 Hb_000329_010--Hb_031224_010 Hb_149055_010 Hb_149055_010 Hb_000329_010--Hb_149055_010 Hb_000419_140 Hb_000419_140 Hb_000329_010--Hb_000419_140 Hb_002370_050 Hb_002370_050 Hb_002809_080--Hb_002370_050 Hb_002809_080--Hb_000076_280 Hb_005000_280 Hb_005000_280 Hb_002809_080--Hb_005000_280 Hb_002809_080--Hb_149055_010 Hb_002809_080--Hb_031224_010 Hb_027400_020 Hb_027400_020 Hb_000076_280--Hb_027400_020 Hb_000076_280--Hb_001769_070 Hb_000076_280--Hb_000419_140 Hb_002616_020 Hb_002616_020 Hb_000076_280--Hb_002616_020 Hb_001769_070--Hb_027400_020 Hb_002518_020 Hb_002518_020 Hb_001769_070--Hb_002518_020 Hb_001769_070--Hb_000419_140 Hb_001769_070--Hb_005000_280 Hb_003633_170 Hb_003633_170 Hb_031224_010--Hb_003633_170 Hb_002566_020 Hb_002566_020 Hb_031224_010--Hb_002566_020 Hb_007370_010 Hb_007370_010 Hb_031224_010--Hb_007370_010 Hb_031224_010--Hb_002370_050 Hb_001269_400 Hb_001269_400 Hb_149055_010--Hb_001269_400 Hb_001138_070 Hb_001138_070 Hb_149055_010--Hb_001138_070 Hb_000645_160 Hb_000645_160 Hb_149055_010--Hb_000645_160 Hb_000120_320 Hb_000120_320 Hb_149055_010--Hb_000120_320 Hb_001777_010 Hb_001777_010 Hb_000419_140--Hb_001777_010 Hb_000419_140--Hb_027400_020 Hb_000419_140--Hb_002616_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107546 2.66375 5.43223 18.5238 0.0461408 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0174337 0.0274369 0.0261591 5.5452 5.74614

CAGE analysis