Hb_007017_100

Information

Type -
Description -
Location Contig7017: 121148-126262
Sequence    

Annotation

kegg
ID pop:POPTR_0010s04930g
description POPTRDRAFT_726336; hypothetical protein
nr
ID XP_012091985.1
description PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JET6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21729 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54894: 121116-123200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_100 0.0 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
2 Hb_007875_020 0.0820693423 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
3 Hb_005731_070 0.0935074701 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008175_050 0.0988873999 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
5 Hb_065521_010 0.1037525675 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
6 Hb_007386_030 0.1049907908 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
7 Hb_000714_060 0.1144590122 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
8 Hb_033772_060 0.1145151899 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004667_030 0.1158898691 - - hypothetical protein VITISV_034568 [Vitis vinifera]
10 Hb_000956_070 0.1168221238 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
11 Hb_000014_080 0.1173517439 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
12 Hb_006501_100 0.1186668868 - - malic enzyme, putative [Ricinus communis]
13 Hb_004282_010 0.1191562172 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
14 Hb_029510_090 0.1252670241 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
15 Hb_005663_090 0.1256211974 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
16 Hb_002783_180 0.1266934469 - - Tubulin beta-6 chain [Gossypium arboreum]
17 Hb_093218_010 0.1272571691 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
18 Hb_000011_370 0.1290047347 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
19 Hb_000951_090 0.1292671435 - - Oligopeptide transporter, putative [Ricinus communis]
20 Hb_001677_090 0.1334020496 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]

Gene co-expression network

sample Hb_007017_100 Hb_007017_100 Hb_007875_020 Hb_007875_020 Hb_007017_100--Hb_007875_020 Hb_005731_070 Hb_005731_070 Hb_007017_100--Hb_005731_070 Hb_008175_050 Hb_008175_050 Hb_007017_100--Hb_008175_050 Hb_065521_010 Hb_065521_010 Hb_007017_100--Hb_065521_010 Hb_007386_030 Hb_007386_030 Hb_007017_100--Hb_007386_030 Hb_000714_060 Hb_000714_060 Hb_007017_100--Hb_000714_060 Hb_007875_020--Hb_065521_010 Hb_007875_020--Hb_007386_030 Hb_029510_090 Hb_029510_090 Hb_007875_020--Hb_029510_090 Hb_168319_060 Hb_168319_060 Hb_007875_020--Hb_168319_060 Hb_002448_020 Hb_002448_020 Hb_007875_020--Hb_002448_020 Hb_000011_370 Hb_000011_370 Hb_005731_070--Hb_000011_370 Hb_005731_070--Hb_007386_030 Hb_005731_070--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_005731_070--Hb_000014_080 Hb_000594_160 Hb_000594_160 Hb_005731_070--Hb_000594_160 Hb_003656_090 Hb_003656_090 Hb_008175_050--Hb_003656_090 Hb_001138_070 Hb_001138_070 Hb_008175_050--Hb_001138_070 Hb_008175_050--Hb_005731_070 Hb_008175_050--Hb_007386_030 Hb_015001_030 Hb_015001_030 Hb_008175_050--Hb_015001_030 Hb_065521_010--Hb_029510_090 Hb_065521_010--Hb_002448_020 Hb_065521_010--Hb_168319_060 Hb_014967_020 Hb_014967_020 Hb_065521_010--Hb_014967_020 Hb_065521_010--Hb_007386_030 Hb_007386_030--Hb_000594_160 Hb_001040_200 Hb_001040_200 Hb_007386_030--Hb_001040_200 Hb_008566_080 Hb_008566_080 Hb_007386_030--Hb_008566_080 Hb_093218_010 Hb_093218_010 Hb_000714_060--Hb_093218_010 Hb_032260_060 Hb_032260_060 Hb_000714_060--Hb_032260_060 Hb_000951_090 Hb_000951_090 Hb_000714_060--Hb_000951_090 Hb_001473_060 Hb_001473_060 Hb_000714_060--Hb_001473_060 Hb_001104_020 Hb_001104_020 Hb_000714_060--Hb_001104_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0340572 0.390771 1.72136 3.42413 0.0203644 0.00920014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.46945 1.86444

CAGE analysis