Hb_008175_050

Information

Type -
Description -
Location Contig8175: 50197-55945
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04260g
description POPTRDRAFT_668286; hypothetical protein
nr
ID XP_012075391.1
description PREDICTED: formin-like protein 2 [Jatropha curcas]
swissprot
ID Q9SE97
description Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1
trembl
ID A0A067KTH5
description Formin-like protein OS=Jatropha curcas GN=JCGZ_10673 PE=3 SV=1
Gene Ontology
ID GO:0048507
description formin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59483: 50255-55471 , PASA_asmbl_59486: 55850-56356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008175_050 0.0 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
2 Hb_003656_090 0.0599371047 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
3 Hb_001138_070 0.0828731319 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
4 Hb_007017_100 0.0988873999 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
5 Hb_005731_070 0.101001378 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007386_030 0.1036889922 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
7 Hb_015001_030 0.1074710503 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
8 Hb_001677_090 0.1076309947 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
9 Hb_000594_160 0.1149608714 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
10 Hb_093218_010 0.1162301213 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
11 Hb_033772_060 0.1165925601 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001440_010 0.1171484629 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
13 Hb_000834_220 0.117160053 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
14 Hb_001157_190 0.1172572868 - - PREDICTED: protein YLS3 [Jatropha curcas]
15 Hb_000714_060 0.1191077477 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
16 Hb_000011_370 0.1199702499 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
17 Hb_000120_320 0.1211919911 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001638_150 0.1212651397 - - acyltransferase, putative [Ricinus communis]
19 Hb_149055_010 0.1226996831 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
20 Hb_002641_140 0.1236399958 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_008175_050 Hb_008175_050 Hb_003656_090 Hb_003656_090 Hb_008175_050--Hb_003656_090 Hb_001138_070 Hb_001138_070 Hb_008175_050--Hb_001138_070 Hb_007017_100 Hb_007017_100 Hb_008175_050--Hb_007017_100 Hb_005731_070 Hb_005731_070 Hb_008175_050--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_008175_050--Hb_007386_030 Hb_015001_030 Hb_015001_030 Hb_008175_050--Hb_015001_030 Hb_001440_010 Hb_001440_010 Hb_003656_090--Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_003656_090--Hb_000834_220 Hb_003656_090--Hb_001138_070 Hb_003656_090--Hb_015001_030 Hb_001141_160 Hb_001141_160 Hb_003656_090--Hb_001141_160 Hb_149055_010 Hb_149055_010 Hb_001138_070--Hb_149055_010 Hb_000645_160 Hb_000645_160 Hb_001138_070--Hb_000645_160 Hb_000329_010 Hb_000329_010 Hb_001138_070--Hb_000329_010 Hb_002641_140 Hb_002641_140 Hb_001138_070--Hb_002641_140 Hb_007875_020 Hb_007875_020 Hb_007017_100--Hb_007875_020 Hb_007017_100--Hb_005731_070 Hb_065521_010 Hb_065521_010 Hb_007017_100--Hb_065521_010 Hb_007017_100--Hb_007386_030 Hb_000714_060 Hb_000714_060 Hb_007017_100--Hb_000714_060 Hb_000011_370 Hb_000011_370 Hb_005731_070--Hb_000011_370 Hb_005731_070--Hb_007386_030 Hb_005731_070--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_005731_070--Hb_000014_080 Hb_000594_160 Hb_000594_160 Hb_005731_070--Hb_000594_160 Hb_007386_030--Hb_000594_160 Hb_007386_030--Hb_007875_020 Hb_007386_030--Hb_065521_010 Hb_001040_200 Hb_001040_200 Hb_007386_030--Hb_001040_200 Hb_008566_080 Hb_008566_080 Hb_007386_030--Hb_008566_080 Hb_001638_150 Hb_001638_150 Hb_015001_030--Hb_001638_150 Hb_014250_010 Hb_014250_010 Hb_015001_030--Hb_014250_010 Hb_021346_020 Hb_021346_020 Hb_015001_030--Hb_021346_020 Hb_001135_010 Hb_001135_010 Hb_015001_030--Hb_001135_010 Hb_093218_010 Hb_093218_010 Hb_015001_030--Hb_093218_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.759235 5.4069 15.0455 24.1752 0.263464 0.0458085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0141285 0.0222363 0.0212768 14.4883 11.6763

CAGE analysis