Hb_003656_090

Information

Type -
Description -
Location Contig3656: 88546-94123
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14720g
description POPTRDRAFT_802055; zinc finger family protein
nr
ID XP_012077012.1
description PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
swissprot
ID Q8GZ92
description Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1
trembl
ID A0A067KCD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07457 PE=4 SV=1
Gene Ontology
ID GO:0010089
description protein brevis radix-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37631: 88692-92982 , PASA_asmbl_37632: 93024-93377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003656_090 0.0 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
2 Hb_008175_050 0.0599371047 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
3 Hb_001440_010 0.083364659 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
4 Hb_000834_220 0.0922765673 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
5 Hb_001138_070 0.093308835 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
6 Hb_015001_030 0.1034530458 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
7 Hb_001141_160 0.1056767397 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
8 Hb_000120_320 0.1079482765 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000594_160 0.1087195165 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
10 Hb_002301_370 0.1091009198 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
11 Hb_000230_360 0.1099734463 - - PREDICTED: BI1-like protein [Jatropha curcas]
12 Hb_001638_150 0.1105138977 - - acyltransferase, putative [Ricinus communis]
13 Hb_005766_010 0.1105430365 - - serine carboxypeptidase, putative [Ricinus communis]
14 Hb_002641_140 0.110801377 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_001946_200 0.1121388334 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
16 Hb_002685_160 0.1140471354 - - leucine-rich repeat protein, putative [Ricinus communis]
17 Hb_001157_190 0.1170466706 - - PREDICTED: protein YLS3 [Jatropha curcas]
18 Hb_007386_030 0.1174422992 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
19 Hb_001269_400 0.1178435012 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
20 Hb_004079_100 0.1205649937 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]

Gene co-expression network

sample Hb_003656_090 Hb_003656_090 Hb_008175_050 Hb_008175_050 Hb_003656_090--Hb_008175_050 Hb_001440_010 Hb_001440_010 Hb_003656_090--Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_003656_090--Hb_000834_220 Hb_001138_070 Hb_001138_070 Hb_003656_090--Hb_001138_070 Hb_015001_030 Hb_015001_030 Hb_003656_090--Hb_015001_030 Hb_001141_160 Hb_001141_160 Hb_003656_090--Hb_001141_160 Hb_008175_050--Hb_001138_070 Hb_007017_100 Hb_007017_100 Hb_008175_050--Hb_007017_100 Hb_005731_070 Hb_005731_070 Hb_008175_050--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_008175_050--Hb_007386_030 Hb_008175_050--Hb_015001_030 Hb_001440_010--Hb_000834_220 Hb_001946_200 Hb_001946_200 Hb_001440_010--Hb_001946_200 Hb_000230_360 Hb_000230_360 Hb_001440_010--Hb_000230_360 Hb_001936_180 Hb_001936_180 Hb_001440_010--Hb_001936_180 Hb_022092_110 Hb_022092_110 Hb_001440_010--Hb_022092_110 Hb_005144_060 Hb_005144_060 Hb_000834_220--Hb_005144_060 Hb_002918_120 Hb_002918_120 Hb_000834_220--Hb_002918_120 Hb_000834_220--Hb_001936_180 Hb_001597_030 Hb_001597_030 Hb_000834_220--Hb_001597_030 Hb_149055_010 Hb_149055_010 Hb_001138_070--Hb_149055_010 Hb_000645_160 Hb_000645_160 Hb_001138_070--Hb_000645_160 Hb_000329_010 Hb_000329_010 Hb_001138_070--Hb_000329_010 Hb_002641_140 Hb_002641_140 Hb_001138_070--Hb_002641_140 Hb_001638_150 Hb_001638_150 Hb_015001_030--Hb_001638_150 Hb_014250_010 Hb_014250_010 Hb_015001_030--Hb_014250_010 Hb_021346_020 Hb_021346_020 Hb_015001_030--Hb_021346_020 Hb_001135_010 Hb_001135_010 Hb_015001_030--Hb_001135_010 Hb_093218_010 Hb_093218_010 Hb_015001_030--Hb_093218_010 Hb_059000_010 Hb_059000_010 Hb_001141_160--Hb_059000_010 Hb_004122_060 Hb_004122_060 Hb_001141_160--Hb_004122_060 Hb_000946_050 Hb_000946_050 Hb_001141_160--Hb_000946_050 Hb_000398_140 Hb_000398_140 Hb_001141_160--Hb_000398_140 Hb_030982_050 Hb_030982_050 Hb_001141_160--Hb_030982_050 Hb_001544_070 Hb_001544_070 Hb_001141_160--Hb_001544_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122784 1.7578 3.85208 5.59695 0.0725723 0.0442506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0287367 0 0.0425906 3.37197 2.94106

CAGE analysis