Hb_001597_030

Information

Type -
Description -
Location Contig1597: 47116-53426
Sequence    

Annotation

kegg
ID egr:104445128
description uncharacterized LOC104445128
nr
ID XP_010057246.1
description PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
swissprot
ID Q1IY56
description Kynurenine formamidase OS=Deinococcus geothermalis (strain DSM 11300) GN=kynB PE=3 SV=1
trembl
ID A0A059C7W3
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02953 PE=4 SV=1
Gene Ontology
ID GO:0004061
description cyclase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14208: 50874-53404 , PASA_asmbl_14209: 51361-51521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001597_030 0.0 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
2 Hb_000834_220 0.0926125169 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
3 Hb_001157_190 0.1055979985 - - PREDICTED: protein YLS3 [Jatropha curcas]
4 Hb_000011_370 0.1128389718 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
5 Hb_000749_120 0.1145167051 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
6 Hb_003540_120 0.1146906606 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_001138_070 0.1166918574 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
8 Hb_001823_090 0.1167634334 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000997_240 0.119368518 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
10 Hb_002027_430 0.1198655476 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
11 Hb_002918_120 0.1217619642 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001348_010 0.1235802554 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
13 Hb_001195_740 0.1237580685 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
14 Hb_001936_180 0.1254786696 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
15 Hb_005333_080 0.1290955904 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003656_090 0.1317549211 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
17 Hb_000735_060 0.132461451 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
18 Hb_001638_150 0.1328956077 - - acyltransferase, putative [Ricinus communis]
19 Hb_001440_010 0.1329788827 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
20 Hb_005144_060 0.1340391206 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001597_030 Hb_001597_030 Hb_000834_220 Hb_000834_220 Hb_001597_030--Hb_000834_220 Hb_001157_190 Hb_001157_190 Hb_001597_030--Hb_001157_190 Hb_000011_370 Hb_000011_370 Hb_001597_030--Hb_000011_370 Hb_000749_120 Hb_000749_120 Hb_001597_030--Hb_000749_120 Hb_003540_120 Hb_003540_120 Hb_001597_030--Hb_003540_120 Hb_001138_070 Hb_001138_070 Hb_001597_030--Hb_001138_070 Hb_001440_010 Hb_001440_010 Hb_000834_220--Hb_001440_010 Hb_005144_060 Hb_005144_060 Hb_000834_220--Hb_005144_060 Hb_002918_120 Hb_002918_120 Hb_000834_220--Hb_002918_120 Hb_003656_090 Hb_003656_090 Hb_000834_220--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_000834_220--Hb_001936_180 Hb_000696_030 Hb_000696_030 Hb_001157_190--Hb_000696_030 Hb_001195_740 Hb_001195_740 Hb_001157_190--Hb_001195_740 Hb_001157_190--Hb_002918_120 Hb_005731_070 Hb_005731_070 Hb_001157_190--Hb_005731_070 Hb_005839_030 Hb_005839_030 Hb_001157_190--Hb_005839_030 Hb_000011_370--Hb_005731_070 Hb_000011_370--Hb_000749_120 Hb_008566_080 Hb_008566_080 Hb_000011_370--Hb_008566_080 Hb_000714_060 Hb_000714_060 Hb_000011_370--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_000011_370--Hb_000014_080 Hb_027556_060 Hb_027556_060 Hb_000749_120--Hb_027556_060 Hb_008143_060 Hb_008143_060 Hb_000749_120--Hb_008143_060 Hb_000749_120--Hb_005731_070 Hb_005144_080 Hb_005144_080 Hb_000749_120--Hb_005144_080 Hb_030685_010 Hb_030685_010 Hb_003540_120--Hb_030685_010 Hb_003606_050 Hb_003606_050 Hb_003540_120--Hb_003606_050 Hb_001188_050 Hb_001188_050 Hb_003540_120--Hb_001188_050 Hb_001823_090 Hb_001823_090 Hb_003540_120--Hb_001823_090 Hb_002681_120 Hb_002681_120 Hb_003540_120--Hb_002681_120 Hb_149055_010 Hb_149055_010 Hb_001138_070--Hb_149055_010 Hb_008175_050 Hb_008175_050 Hb_001138_070--Hb_008175_050 Hb_000645_160 Hb_000645_160 Hb_001138_070--Hb_000645_160 Hb_001138_070--Hb_003656_090 Hb_000329_010 Hb_000329_010 Hb_001138_070--Hb_000329_010 Hb_002641_140 Hb_002641_140 Hb_001138_070--Hb_002641_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34893 9.87122 40.4867 52.6769 0.278897 1.12807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84646 0.877028 0.153885 26.8286 16.2727

CAGE analysis