Hb_003606_050

Information

Type -
Description -
Location Contig3606: 56553-75900
Sequence    

Annotation

kegg
ID rcu:RCOM_1698530
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_012092087.1
description PREDICTED: beta-galactosidase 10 [Jatropha curcas]
swissprot
ID Q5N8X6
description Beta-galactosidase 3 OS=Oryza sativa subsp. japonica GN=Os01g0875500 PE=3 SV=1
trembl
ID A0A067LK43
description Beta-galactosidase OS=Jatropha curcas GN=JCGZ_19489 PE=3 SV=1
Gene Ontology
ID GO:0009505
description beta-galactosidase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37156: 57618-75824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003606_050 0.0 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
2 Hb_000735_060 0.081517205 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
3 Hb_005568_020 0.0857378272 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
4 Hb_000008_200 0.102591335 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
5 Hb_001085_190 0.1053434348 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
6 Hb_001188_050 0.1078086224 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001936_180 0.1109379976 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
8 Hb_003540_120 0.115066437 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_022092_110 0.1162035467 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
10 Hb_064546_010 0.1174006877 - - PREDICTED: peroxidase 3 [Jatropha curcas]
11 Hb_001054_040 0.1179995204 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
12 Hb_003728_110 0.1189298986 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
13 Hb_001823_090 0.1190496292 - - conserved hypothetical protein [Ricinus communis]
14 Hb_116647_010 0.122894147 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000023_110 0.1236912497 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
16 Hb_001104_150 0.1239472322 - - PREDICTED: protein ROS1 [Jatropha curcas]
17 Hb_002027_430 0.1244263686 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
18 Hb_000735_020 0.1248726479 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
19 Hb_001195_550 0.1249793993 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
20 Hb_000645_160 0.1260111063 - - protein translocase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003606_050 Hb_003606_050 Hb_000735_060 Hb_000735_060 Hb_003606_050--Hb_000735_060 Hb_005568_020 Hb_005568_020 Hb_003606_050--Hb_005568_020 Hb_000008_200 Hb_000008_200 Hb_003606_050--Hb_000008_200 Hb_001085_190 Hb_001085_190 Hb_003606_050--Hb_001085_190 Hb_001188_050 Hb_001188_050 Hb_003606_050--Hb_001188_050 Hb_001936_180 Hb_001936_180 Hb_003606_050--Hb_001936_180 Hb_000735_060--Hb_005568_020 Hb_022092_110 Hb_022092_110 Hb_000735_060--Hb_022092_110 Hb_000735_060--Hb_001936_180 Hb_000418_170 Hb_000418_170 Hb_000735_060--Hb_000418_170 Hb_000735_060--Hb_000008_200 Hb_002078_390 Hb_002078_390 Hb_005568_020--Hb_002078_390 Hb_005568_020--Hb_000008_200 Hb_128196_010 Hb_128196_010 Hb_005568_020--Hb_128196_010 Hb_000207_350 Hb_000207_350 Hb_005568_020--Hb_000207_350 Hb_008511_040 Hb_008511_040 Hb_000008_200--Hb_008511_040 Hb_091318_010 Hb_091318_010 Hb_000008_200--Hb_091318_010 Hb_001268_160 Hb_001268_160 Hb_000008_200--Hb_001268_160 Hb_000735_020 Hb_000735_020 Hb_001085_190--Hb_000735_020 Hb_011918_070 Hb_011918_070 Hb_001085_190--Hb_011918_070 Hb_009113_080 Hb_009113_080 Hb_001085_190--Hb_009113_080 Hb_012518_080 Hb_012518_080 Hb_001085_190--Hb_012518_080 Hb_000005_360 Hb_000005_360 Hb_001085_190--Hb_000005_360 Hb_186247_010 Hb_186247_010 Hb_001188_050--Hb_186247_010 Hb_000963_050 Hb_000963_050 Hb_001188_050--Hb_000963_050 Hb_003540_120 Hb_003540_120 Hb_001188_050--Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_001188_050--Hb_030685_010 Hb_000274_050 Hb_000274_050 Hb_001188_050--Hb_000274_050 Hb_001936_180--Hb_022092_110 Hb_000365_430 Hb_000365_430 Hb_001936_180--Hb_000365_430 Hb_001440_010 Hb_001440_010 Hb_001936_180--Hb_001440_010 Hb_001946_200 Hb_001946_200 Hb_001936_180--Hb_001946_200 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_001936_180--Hb_000418_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.35819 2.24004 8.2187 11.8717 0.285478 0.222395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.226444 0.32896 0.18296 2.44366 4.25499

CAGE analysis