Hb_000963_050

Information

Type -
Description -
Location Contig963: 48558-49073
Sequence    

Annotation

kegg
ID vvi:100251941
description skin secretory protein xP2-like
nr
ID XP_012064827.1
description PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9Y8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05525 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63824: 48644-49231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_050 0.0 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
2 Hb_000274_050 0.1015329452 - - Squalene monooxygenase, putative [Ricinus communis]
3 Hb_012286_060 0.1155625312 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
4 Hb_001188_050 0.1184537617 - - conserved hypothetical protein [Ricinus communis]
5 Hb_020805_040 0.1293110349 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
6 Hb_143629_120 0.1326596035 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
7 Hb_118283_010 0.1342120897 - - conserved hypothetical protein [Ricinus communis]
8 Hb_030685_010 0.1373302503 - - -
9 Hb_003606_050 0.1388380209 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
10 Hb_000049_270 0.1393484978 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
11 Hb_000599_330 0.1404142141 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
12 Hb_006570_090 0.1405560473 - - tubulin beta chain, putative [Ricinus communis]
13 Hb_000321_170 0.1428828516 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
14 Hb_003029_120 0.1442630656 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
15 Hb_000544_200 0.1443341237 - - PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]
16 Hb_064546_010 0.1459724434 - - PREDICTED: peroxidase 3 [Jatropha curcas]
17 Hb_186247_010 0.1490618204 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
18 Hb_003540_120 0.1520418142 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_008686_010 0.1544378004 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001450_040 0.1555067157 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]

Gene co-expression network

sample Hb_000963_050 Hb_000963_050 Hb_000274_050 Hb_000274_050 Hb_000963_050--Hb_000274_050 Hb_012286_060 Hb_012286_060 Hb_000963_050--Hb_012286_060 Hb_001188_050 Hb_001188_050 Hb_000963_050--Hb_001188_050 Hb_020805_040 Hb_020805_040 Hb_000963_050--Hb_020805_040 Hb_143629_120 Hb_143629_120 Hb_000963_050--Hb_143629_120 Hb_118283_010 Hb_118283_010 Hb_000963_050--Hb_118283_010 Hb_000274_050--Hb_001188_050 Hb_005000_010 Hb_005000_010 Hb_000274_050--Hb_005000_010 Hb_002876_200 Hb_002876_200 Hb_000274_050--Hb_002876_200 Hb_001040_080 Hb_001040_080 Hb_000274_050--Hb_001040_080 Hb_001439_210 Hb_001439_210 Hb_000274_050--Hb_001439_210 Hb_000030_020 Hb_000030_020 Hb_012286_060--Hb_000030_020 Hb_005348_150 Hb_005348_150 Hb_012286_060--Hb_005348_150 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_118939_010 Hb_118939_010 Hb_012286_060--Hb_118939_010 Hb_012286_060--Hb_143629_120 Hb_186247_010 Hb_186247_010 Hb_001188_050--Hb_186247_010 Hb_003606_050 Hb_003606_050 Hb_001188_050--Hb_003606_050 Hb_003540_120 Hb_003540_120 Hb_001188_050--Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_001188_050--Hb_030685_010 Hb_020805_040--Hb_118283_010 Hb_020805_040--Hb_003540_120 Hb_020805_040--Hb_030685_010 Hb_001823_090 Hb_001823_090 Hb_020805_040--Hb_001823_090 Hb_000320_310 Hb_000320_310 Hb_020805_040--Hb_000320_310 Hb_008686_010 Hb_008686_010 Hb_143629_120--Hb_008686_010 Hb_001195_550 Hb_001195_550 Hb_143629_120--Hb_001195_550 Hb_000599_330 Hb_000599_330 Hb_143629_120--Hb_000599_330 Hb_015941_010 Hb_015941_010 Hb_143629_120--Hb_015941_010 Hb_169893_010 Hb_169893_010 Hb_143629_120--Hb_169893_010 Hb_000544_200 Hb_000544_200 Hb_118283_010--Hb_000544_200 Hb_118283_010--Hb_012286_060 Hb_004586_040 Hb_004586_040 Hb_118283_010--Hb_004586_040 Hb_003688_010 Hb_003688_010 Hb_118283_010--Hb_003688_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45856 6.14096 27.6318 44.5537 2.83323 3.73597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.637543 0.500894 0.341568 4.94189 14.3307

CAGE analysis