Hb_005000_010

Information

Type -
Description -
Location Contig5000: 2354-11798
Sequence    

Annotation

kegg
ID rcu:RCOM_1047770
description Inner membrane protein ybaL, putative
nr
ID XP_012076898.1
description PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZUN3
description K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2
trembl
ID B9RKA1
description Inner membrane protein ybaL, putative OS=Ricinus communis GN=RCOM_1047770 PE=4 SV=1
Gene Ontology
ID GO:0016021
description k(+) efflux antiporter 4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_010 0.0 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
2 Hb_000320_310 0.0848071778 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
3 Hb_004330_020 0.1091592048 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
4 Hb_000274_050 0.1282494517 - - Squalene monooxygenase, putative [Ricinus communis]
5 Hb_004218_200 0.1314337013 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_010863_030 0.1334749683 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
7 Hb_002876_200 0.1361821397 - - PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
8 Hb_002897_010 0.1379886969 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
9 Hb_050847_040 0.138675567 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
10 Hb_000227_400 0.141535546 - - lipoxygenase, putative [Ricinus communis]
11 Hb_010683_030 0.1418402706 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002869_060 0.14184203 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
13 Hb_001488_290 0.1435346136 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
14 Hb_003029_120 0.1473068723 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
15 Hb_000200_330 0.1473313953 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
16 Hb_003687_040 0.1474536462 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
17 Hb_004545_080 0.1478138013 - - protein with unknown function [Ricinus communis]
18 Hb_002463_050 0.1519773902 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001123_310 0.1523120415 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
20 Hb_006133_020 0.1534924209 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]

Gene co-expression network

sample Hb_005000_010 Hb_005000_010 Hb_000320_310 Hb_000320_310 Hb_005000_010--Hb_000320_310 Hb_004330_020 Hb_004330_020 Hb_005000_010--Hb_004330_020 Hb_000274_050 Hb_000274_050 Hb_005000_010--Hb_000274_050 Hb_004218_200 Hb_004218_200 Hb_005000_010--Hb_004218_200 Hb_010863_030 Hb_010863_030 Hb_005000_010--Hb_010863_030 Hb_002876_200 Hb_002876_200 Hb_005000_010--Hb_002876_200 Hb_000320_310--Hb_004218_200 Hb_000320_310--Hb_010863_030 Hb_002897_010 Hb_002897_010 Hb_000320_310--Hb_002897_010 Hb_001123_310 Hb_001123_310 Hb_000320_310--Hb_001123_310 Hb_001195_550 Hb_001195_550 Hb_000320_310--Hb_001195_550 Hb_050847_040 Hb_050847_040 Hb_004330_020--Hb_050847_040 Hb_002675_080 Hb_002675_080 Hb_004330_020--Hb_002675_080 Hb_007765_130 Hb_007765_130 Hb_004330_020--Hb_007765_130 Hb_000635_050 Hb_000635_050 Hb_004330_020--Hb_000635_050 Hb_000042_050 Hb_000042_050 Hb_004330_020--Hb_000042_050 Hb_000963_050 Hb_000963_050 Hb_000274_050--Hb_000963_050 Hb_001188_050 Hb_001188_050 Hb_000274_050--Hb_001188_050 Hb_000274_050--Hb_002876_200 Hb_001040_080 Hb_001040_080 Hb_000274_050--Hb_001040_080 Hb_001439_210 Hb_001439_210 Hb_000274_050--Hb_001439_210 Hb_003580_050 Hb_003580_050 Hb_004218_200--Hb_003580_050 Hb_001357_050 Hb_001357_050 Hb_004218_200--Hb_001357_050 Hb_001104_150 Hb_001104_150 Hb_004218_200--Hb_001104_150 Hb_028008_040 Hb_028008_040 Hb_004218_200--Hb_028008_040 Hb_005730_110 Hb_005730_110 Hb_004218_200--Hb_005730_110 Hb_010683_030 Hb_010683_030 Hb_010863_030--Hb_010683_030 Hb_010863_030--Hb_002897_010 Hb_010683_070 Hb_010683_070 Hb_010863_030--Hb_010683_070 Hb_001536_020 Hb_001536_020 Hb_010863_030--Hb_001536_020 Hb_001488_290 Hb_001488_290 Hb_002876_200--Hb_001488_290 Hb_004586_040 Hb_004586_040 Hb_002876_200--Hb_004586_040 Hb_002876_200--Hb_050847_040 Hb_000086_180 Hb_000086_180 Hb_002876_200--Hb_000086_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.210713 0.490653 2.40056 1.81896 0.124253 0.344954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0465654 0.0438199 0.501537 1.22004

CAGE analysis