Hb_001357_050

Information

Type -
Description -
Location Contig1357: 43653-46129
Sequence    

Annotation

kegg
ID rcu:RCOM_0753130
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012070897.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
swissprot
ID Q9FJU9
description Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1
trembl
ID A0A067L3W7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00942 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09906: 43568-46049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_050 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
2 Hb_004218_200 0.1024332558 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_064546_010 0.1118143466 - - PREDICTED: peroxidase 3 [Jatropha curcas]
4 Hb_000417_050 0.1137200594 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
5 Hb_003580_050 0.1158730461 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
6 Hb_004696_010 0.1159443007 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
7 Hb_000012_330 0.1159890386 - - pollen specific protein sf21, putative [Ricinus communis]
8 Hb_000270_100 0.1265043328 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
9 Hb_003835_080 0.1314177126 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
10 Hb_012484_050 0.1333020551 - - PREDICTED: kinesin KP1 [Jatropha curcas]
11 Hb_011918_070 0.1334300556 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
12 Hb_000622_050 0.135137685 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000083_080 0.1352617338 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
14 Hb_001951_080 0.1360640875 - - O-acetyltransferase, putative [Ricinus communis]
15 Hb_001104_150 0.1376412576 - - PREDICTED: protein ROS1 [Jatropha curcas]
16 Hb_002662_110 0.1410670022 - - Kinesin heavy chain, putative [Ricinus communis]
17 Hb_005976_110 0.1412156644 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
18 Hb_004994_330 0.1416594351 - - DNA binding protein, putative [Ricinus communis]
19 Hb_028008_040 0.141693095 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000996_030 0.1418383736 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_050 Hb_001357_050 Hb_004218_200 Hb_004218_200 Hb_001357_050--Hb_004218_200 Hb_064546_010 Hb_064546_010 Hb_001357_050--Hb_064546_010 Hb_000417_050 Hb_000417_050 Hb_001357_050--Hb_000417_050 Hb_003580_050 Hb_003580_050 Hb_001357_050--Hb_003580_050 Hb_004696_010 Hb_004696_010 Hb_001357_050--Hb_004696_010 Hb_000012_330 Hb_000012_330 Hb_001357_050--Hb_000012_330 Hb_000320_310 Hb_000320_310 Hb_004218_200--Hb_000320_310 Hb_004218_200--Hb_003580_050 Hb_001104_150 Hb_001104_150 Hb_004218_200--Hb_001104_150 Hb_028008_040 Hb_028008_040 Hb_004218_200--Hb_028008_040 Hb_005730_110 Hb_005730_110 Hb_004218_200--Hb_005730_110 Hb_000984_130 Hb_000984_130 Hb_064546_010--Hb_000984_130 Hb_000735_020 Hb_000735_020 Hb_064546_010--Hb_000735_020 Hb_116647_010 Hb_116647_010 Hb_064546_010--Hb_116647_010 Hb_003606_050 Hb_003606_050 Hb_064546_010--Hb_003606_050 Hb_033312_070 Hb_033312_070 Hb_064546_010--Hb_033312_070 Hb_004994_330 Hb_004994_330 Hb_000417_050--Hb_004994_330 Hb_002078_390 Hb_002078_390 Hb_000417_050--Hb_002078_390 Hb_002662_110 Hb_002662_110 Hb_000417_050--Hb_002662_110 Hb_001677_040 Hb_001677_040 Hb_000417_050--Hb_001677_040 Hb_000622_050 Hb_000622_050 Hb_000417_050--Hb_000622_050 Hb_003580_050--Hb_028008_040 Hb_000977_030 Hb_000977_030 Hb_003580_050--Hb_000977_030 Hb_000996_030 Hb_000996_030 Hb_003580_050--Hb_000996_030 Hb_003580_050--Hb_004696_010 Hb_002724_010 Hb_002724_010 Hb_003580_050--Hb_002724_010 Hb_011918_070 Hb_011918_070 Hb_004696_010--Hb_011918_070 Hb_004696_010--Hb_028008_040 Hb_003835_080 Hb_003835_080 Hb_004696_010--Hb_003835_080 Hb_001541_130 Hb_001541_130 Hb_004696_010--Hb_001541_130 Hb_001159_230 Hb_001159_230 Hb_004696_010--Hb_001159_230 Hb_000012_330--Hb_000622_050 Hb_012098_160 Hb_012098_160 Hb_000012_330--Hb_012098_160 Hb_000012_330--Hb_003835_080 Hb_012484_050 Hb_012484_050 Hb_000012_330--Hb_012484_050 Hb_005725_240 Hb_005725_240 Hb_000012_330--Hb_005725_240 Hb_001486_280 Hb_001486_280 Hb_000012_330--Hb_001486_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.74818 12.5715 75.0441 108.013 1.86295 3.33869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12823 0.291224 1.44878 17.6365 76.7664

CAGE analysis