Hb_000984_130

Information

Type -
Description -
Location Contig984: 191585-195665
Sequence    

Annotation

kegg
ID pmum:103335038
description tubulin alpha chain
nr
ID AIX10966.1
description tubulin [Ornithogalum longebracteatum]
swissprot
ID Q6VAG0
description Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1
trembl
ID A0A0A0YMU3
description Tubulin OS=Ornithogalum saundersiae GN=tuba PE=2 SV=1
Gene Ontology
ID GO:0005737
description tubulin alpha chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64549: 191886-192653 , PASA_asmbl_64550: 195275-195784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_130 0.0 - - tubulin [Ornithogalum longebracteatum]
2 Hb_000997_080 0.0936117609 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
3 Hb_000011_280 0.0960886116 - - pectinesterase family protein [Populus trichocarpa]
4 Hb_064546_010 0.0982641444 - - PREDICTED: peroxidase 3 [Jatropha curcas]
5 Hb_000735_020 0.1023132113 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
6 Hb_006788_110 0.1045462168 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
7 Hb_002701_030 0.1058289311 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
8 Hb_006002_050 0.1077826991 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
9 Hb_000462_070 0.1111253797 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
10 Hb_002292_080 0.1134028055 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
11 Hb_012518_080 0.1174224691 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
12 Hb_033312_070 0.1195411366 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
13 Hb_000003_610 0.1244268738 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
14 Hb_006088_020 0.1265782816 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_009736_020 0.1278126472 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
16 Hb_001085_190 0.131344514 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
17 Hb_000260_110 0.1314436642 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
18 Hb_005648_020 0.1324992404 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
19 Hb_025787_020 0.1331936397 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
20 Hb_003893_180 0.1334555307 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_130 Hb_000984_130 Hb_000997_080 Hb_000997_080 Hb_000984_130--Hb_000997_080 Hb_000011_280 Hb_000011_280 Hb_000984_130--Hb_000011_280 Hb_064546_010 Hb_064546_010 Hb_000984_130--Hb_064546_010 Hb_000735_020 Hb_000735_020 Hb_000984_130--Hb_000735_020 Hb_006788_110 Hb_006788_110 Hb_000984_130--Hb_006788_110 Hb_002701_030 Hb_002701_030 Hb_000984_130--Hb_002701_030 Hb_006002_050 Hb_006002_050 Hb_000997_080--Hb_006002_050 Hb_000003_610 Hb_000003_610 Hb_000997_080--Hb_000003_610 Hb_000997_080--Hb_002701_030 Hb_000997_080--Hb_000011_280 Hb_000997_080--Hb_006788_110 Hb_000011_280--Hb_006002_050 Hb_001663_060 Hb_001663_060 Hb_000011_280--Hb_001663_060 Hb_000395_310 Hb_000395_310 Hb_000011_280--Hb_000395_310 Hb_000011_280--Hb_006788_110 Hb_064546_010--Hb_000735_020 Hb_001357_050 Hb_001357_050 Hb_064546_010--Hb_001357_050 Hb_116647_010 Hb_116647_010 Hb_064546_010--Hb_116647_010 Hb_003606_050 Hb_003606_050 Hb_064546_010--Hb_003606_050 Hb_033312_070 Hb_033312_070 Hb_064546_010--Hb_033312_070 Hb_001085_190 Hb_001085_190 Hb_000735_020--Hb_001085_190 Hb_012518_080 Hb_012518_080 Hb_000735_020--Hb_012518_080 Hb_011918_070 Hb_011918_070 Hb_000735_020--Hb_011918_070 Hb_000735_020--Hb_033312_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_000735_020--Hb_006788_110 Hb_006788_110--Hb_033312_070 Hb_003376_140 Hb_003376_140 Hb_006788_110--Hb_003376_140 Hb_004531_160 Hb_004531_160 Hb_006788_110--Hb_004531_160 Hb_006788_110--Hb_011918_070 Hb_000017_250 Hb_000017_250 Hb_002701_030--Hb_000017_250 Hb_005648_020 Hb_005648_020 Hb_002701_030--Hb_005648_020 Hb_003849_170 Hb_003849_170 Hb_002701_030--Hb_003849_170 Hb_002600_120 Hb_002600_120 Hb_002701_030--Hb_002600_120 Hb_002701_030--Hb_004531_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.0765 8.40993 53.1784 154.706 0.721913 1.00297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.690996 0.936142 2.19595 17.1876 40.7878

CAGE analysis