Hb_006002_050

Information

Type -
Description -
Location Contig6002: 101398-104251
Sequence    

Annotation

kegg
ID rcu:RCOM_0707330
description hypothetical protein
nr
ID XP_012077195.1
description PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50564: 101472-104161
cDNA
(Sanger)
(ID:Location)		 006_G10.ab1: 101472-104010 , 033_C01.ab1: 101463-103964

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006002_050 0.0 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
2 Hb_000011_280 0.0866486882 - - pectinesterase family protein [Populus trichocarpa]
3 Hb_000997_080 0.0897721903 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
4 Hb_001159_230 0.0930688345 - - Kinesin heavy chain, putative [Ricinus communis]
5 Hb_000003_280 0.0958201569 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002783_280 0.1015415791 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
7 Hb_000297_140 0.1022906713 - - hypothetical protein RCOM_0293450 [Ricinus communis]
8 Hb_000922_400 0.1063260597 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
9 Hb_006788_110 0.1073585418 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
10 Hb_000984_130 0.1077826991 - - tubulin [Ornithogalum longebracteatum]
11 Hb_000140_320 0.1110846802 - - delta-8 sphingolipid desaturase [Vernicia fordii]
12 Hb_000103_070 0.1170235385 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
13 Hb_053264_010 0.117094483 - - beta glucosidase [Hevea brasiliensis]
14 Hb_002471_130 0.1218811884 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
15 Hb_000878_050 0.1224094335 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
16 Hb_000820_110 0.1235224424 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
17 Hb_000103_450 0.124823873 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
18 Hb_003097_160 0.1258127304 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
19 Hb_010962_020 0.1262138168 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
20 Hb_004435_020 0.1264435125 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]

Gene co-expression network

sample Hb_006002_050 Hb_006002_050 Hb_000011_280 Hb_000011_280 Hb_006002_050--Hb_000011_280 Hb_000997_080 Hb_000997_080 Hb_006002_050--Hb_000997_080 Hb_001159_230 Hb_001159_230 Hb_006002_050--Hb_001159_230 Hb_000003_280 Hb_000003_280 Hb_006002_050--Hb_000003_280 Hb_002783_280 Hb_002783_280 Hb_006002_050--Hb_002783_280 Hb_000297_140 Hb_000297_140 Hb_006002_050--Hb_000297_140 Hb_000984_130 Hb_000984_130 Hb_000011_280--Hb_000984_130 Hb_001663_060 Hb_001663_060 Hb_000011_280--Hb_001663_060 Hb_000395_310 Hb_000395_310 Hb_000011_280--Hb_000395_310 Hb_000011_280--Hb_000997_080 Hb_006788_110 Hb_006788_110 Hb_000011_280--Hb_006788_110 Hb_000997_080--Hb_000984_130 Hb_000003_610 Hb_000003_610 Hb_000997_080--Hb_000003_610 Hb_002701_030 Hb_002701_030 Hb_000997_080--Hb_002701_030 Hb_000997_080--Hb_006788_110 Hb_000878_050 Hb_000878_050 Hb_001159_230--Hb_000878_050 Hb_001095_020 Hb_001095_020 Hb_001159_230--Hb_001095_020 Hb_004696_010 Hb_004696_010 Hb_001159_230--Hb_004696_010 Hb_004435_020 Hb_004435_020 Hb_001159_230--Hb_004435_020 Hb_005976_110 Hb_005976_110 Hb_001159_230--Hb_005976_110 Hb_000003_280--Hb_000878_050 Hb_010962_020 Hb_010962_020 Hb_000003_280--Hb_010962_020 Hb_053264_010 Hb_053264_010 Hb_000003_280--Hb_053264_010 Hb_000103_450 Hb_000103_450 Hb_000003_280--Hb_000103_450 Hb_001898_040 Hb_001898_040 Hb_000003_280--Hb_001898_040 Hb_006846_040 Hb_006846_040 Hb_000003_280--Hb_006846_040 Hb_000317_380 Hb_000317_380 Hb_002783_280--Hb_000317_380 Hb_007122_020 Hb_007122_020 Hb_002783_280--Hb_007122_020 Hb_000140_320 Hb_000140_320 Hb_002783_280--Hb_000140_320 Hb_162472_010 Hb_162472_010 Hb_002783_280--Hb_162472_010 Hb_000413_120 Hb_000413_120 Hb_002783_280--Hb_000413_120 Hb_000820_110 Hb_000820_110 Hb_000297_140--Hb_000820_110 Hb_030565_100 Hb_030565_100 Hb_000297_140--Hb_030565_100 Hb_000297_140--Hb_000997_080 Hb_000297_140--Hb_000011_280 Hb_007574_040 Hb_007574_040 Hb_000297_140--Hb_007574_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01272 7.10799 48.3105 135.654 0.897685 1.21212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.74304 1.34082 2.61354 7.07367 50.69

CAGE analysis