Hb_000297_140

Information

Type -
Description -
Location Contig297: 163023-169292
Sequence    

Annotation

kegg
ID rcu:RCOM_0293450
description hypothetical protein
nr
ID XP_002530345.1
description hypothetical protein RCOM_0293450 [Ricinus communis]
swissprot
ID P9WMV9
description Cholesterol oxidase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=choD PE=1 SV=1
trembl
ID B9SWH6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0293450 PE=4 SV=1
Gene Ontology
ID GO:0016614
description hypothetical protein RCOM_0293450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31095: 163543-164103 , PASA_asmbl_31098: 165578-165929 , PASA_asmbl_31099: 167240-167588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_140 0.0 - - hypothetical protein RCOM_0293450 [Ricinus communis]
2 Hb_000820_110 0.0848614059 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
3 Hb_006002_050 0.1022906713 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
4 Hb_030565_100 0.117211237 - - serine hydroxymethyltransferase, putative [Ricinus communis]
5 Hb_000997_080 0.1181561678 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
6 Hb_000011_280 0.1198234234 - - pectinesterase family protein [Populus trichocarpa]
7 Hb_007574_040 0.1247214273 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
8 Hb_064546_010 0.1289498557 - - PREDICTED: peroxidase 3 [Jatropha curcas]
9 Hb_084147_010 0.1332187297 - - amino acid transporter, putative [Ricinus communis]
10 Hb_000077_100 0.1339744478 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
11 Hb_000984_130 0.1343951071 - - tubulin [Ornithogalum longebracteatum]
12 Hb_000103_070 0.1368901591 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
13 Hb_002759_030 0.1375698986 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
14 Hb_019516_060 0.1399179594 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
15 Hb_002233_160 0.1416978147 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
16 Hb_019516_070 0.1418315691 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
17 Hb_001102_160 0.1428890706 - - PREDICTED: galacturonokinase [Jatropha curcas]
18 Hb_002073_170 0.1439993249 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
19 Hb_000260_110 0.1452495005 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
20 Hb_010883_180 0.1453586906 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000297_140 Hb_000297_140 Hb_000820_110 Hb_000820_110 Hb_000297_140--Hb_000820_110 Hb_006002_050 Hb_006002_050 Hb_000297_140--Hb_006002_050 Hb_030565_100 Hb_030565_100 Hb_000297_140--Hb_030565_100 Hb_000997_080 Hb_000997_080 Hb_000297_140--Hb_000997_080 Hb_000011_280 Hb_000011_280 Hb_000297_140--Hb_000011_280 Hb_007574_040 Hb_007574_040 Hb_000297_140--Hb_007574_040 Hb_000193_210 Hb_000193_210 Hb_000820_110--Hb_000193_210 Hb_019516_070 Hb_019516_070 Hb_000820_110--Hb_019516_070 Hb_019516_060 Hb_019516_060 Hb_000820_110--Hb_019516_060 Hb_006750_010 Hb_006750_010 Hb_000820_110--Hb_006750_010 Hb_000077_100 Hb_000077_100 Hb_000820_110--Hb_000077_100 Hb_006002_050--Hb_000011_280 Hb_006002_050--Hb_000997_080 Hb_001159_230 Hb_001159_230 Hb_006002_050--Hb_001159_230 Hb_000003_280 Hb_000003_280 Hb_006002_050--Hb_000003_280 Hb_002783_280 Hb_002783_280 Hb_006002_050--Hb_002783_280 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_000236_180 Hb_000236_180 Hb_030565_100--Hb_000236_180 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_003470_110 Hb_003470_110 Hb_030565_100--Hb_003470_110 Hb_000984_130 Hb_000984_130 Hb_000997_080--Hb_000984_130 Hb_000003_610 Hb_000003_610 Hb_000997_080--Hb_000003_610 Hb_002701_030 Hb_002701_030 Hb_000997_080--Hb_002701_030 Hb_000997_080--Hb_000011_280 Hb_006788_110 Hb_006788_110 Hb_000997_080--Hb_006788_110 Hb_000011_280--Hb_000984_130 Hb_001663_060 Hb_001663_060 Hb_000011_280--Hb_001663_060 Hb_000395_310 Hb_000395_310 Hb_000011_280--Hb_000395_310 Hb_000011_280--Hb_006788_110 Hb_008695_220 Hb_008695_220 Hb_007574_040--Hb_008695_220 Hb_000054_010 Hb_000054_010 Hb_007574_040--Hb_000054_010 Hb_000622_120 Hb_000622_120 Hb_007574_040--Hb_000622_120 Hb_002759_030 Hb_002759_030 Hb_007574_040--Hb_002759_030 Hb_000622_190 Hb_000622_190 Hb_007574_040--Hb_000622_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0222893 0.094017 0.54262 1.97496 0.00642106 0.0416375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0581911 0.0572399 0.0437963 0.172545 0.781575

CAGE analysis