Hb_000622_120

Information

Type -
Description -
Location Contig622: 125128-125367
Sequence    

Annotation

kegg
ID rcu:RCOM_0149730
description hypothetical protein
nr
ID AEW43293.1
description hypothetical protein [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID G9F9P4
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51558: 125104-125609
cDNA
(Sanger)
(ID:Location)		 008_B22.ab1: 125104-125609 , 023_O18.ab1: 125104-125609 , 034_B08.ab1: 125104-125609

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_120 0.0 - - hypothetical protein [Hevea brasiliensis]
2 Hb_000622_230 0.093315671 - - PREDICTED: uncharacterized protein LOC105642895 [Jatropha curcas]
3 Hb_102772_010 0.0936932064 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000622_190 0.1272177647 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
5 Hb_000115_200 0.1347497023 - - PREDICTED: endonuclease 2 [Jatropha curcas]
6 Hb_007574_040 0.1432750249 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
7 Hb_177208_010 0.1469845028 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
8 Hb_000995_020 0.1557921591 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000054_010 0.1605925617 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_092010_010 0.1658588485 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
11 Hb_000617_300 0.169131359 - - RALFL33, putative [Ricinus communis]
12 Hb_005455_100 0.1695741591 - - amino acid transporter, putative [Ricinus communis]
13 Hb_001584_270 0.1736374861 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000462_070 0.1736467073 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
15 Hb_000331_630 0.1740965171 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
16 Hb_025193_010 0.1744147366 - - PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like isoform X1 [Jatropha curcas]
17 Hb_002783_280 0.1746175613 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
18 Hb_000106_010 0.1760743398 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
19 Hb_003680_240 0.1764414118 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
20 Hb_002374_410 0.1770224304 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000622_120 Hb_000622_120 Hb_000622_230 Hb_000622_230 Hb_000622_120--Hb_000622_230 Hb_102772_010 Hb_102772_010 Hb_000622_120--Hb_102772_010 Hb_000622_190 Hb_000622_190 Hb_000622_120--Hb_000622_190 Hb_000115_200 Hb_000115_200 Hb_000622_120--Hb_000115_200 Hb_007574_040 Hb_007574_040 Hb_000622_120--Hb_007574_040 Hb_177208_010 Hb_177208_010 Hb_000622_120--Hb_177208_010 Hb_000106_010 Hb_000106_010 Hb_000622_230--Hb_000106_010 Hb_000622_230--Hb_102772_010 Hb_025193_010 Hb_025193_010 Hb_000622_230--Hb_025193_010 Hb_000622_230--Hb_177208_010 Hb_002263_050 Hb_002263_050 Hb_000622_230--Hb_002263_050 Hb_102772_010--Hb_000622_190 Hb_000995_020 Hb_000995_020 Hb_102772_010--Hb_000995_020 Hb_102772_010--Hb_000115_200 Hb_001433_230 Hb_001433_230 Hb_102772_010--Hb_001433_230 Hb_000608_090 Hb_000608_090 Hb_000622_190--Hb_000608_090 Hb_007311_050 Hb_007311_050 Hb_000622_190--Hb_007311_050 Hb_004586_440 Hb_004586_440 Hb_000622_190--Hb_004586_440 Hb_000362_030 Hb_000362_030 Hb_000622_190--Hb_000362_030 Hb_001584_270 Hb_001584_270 Hb_000115_200--Hb_001584_270 Hb_002014_130 Hb_002014_130 Hb_000115_200--Hb_002014_130 Hb_005291_020 Hb_005291_020 Hb_000115_200--Hb_005291_020 Hb_003580_020 Hb_003580_020 Hb_000115_200--Hb_003580_020 Hb_003055_100 Hb_003055_100 Hb_000115_200--Hb_003055_100 Hb_006717_060 Hb_006717_060 Hb_000115_200--Hb_006717_060 Hb_000297_140 Hb_000297_140 Hb_007574_040--Hb_000297_140 Hb_008695_220 Hb_008695_220 Hb_007574_040--Hb_008695_220 Hb_000054_010 Hb_000054_010 Hb_007574_040--Hb_000054_010 Hb_002759_030 Hb_002759_030 Hb_007574_040--Hb_002759_030 Hb_007574_040--Hb_000622_190 Hb_000227_290 Hb_000227_290 Hb_177208_010--Hb_000227_290 Hb_001357_110 Hb_001357_110 Hb_177208_010--Hb_001357_110 Hb_014834_100 Hb_014834_100 Hb_177208_010--Hb_014834_100 Hb_029584_030 Hb_029584_030 Hb_177208_010--Hb_029584_030 Hb_000664_010 Hb_000664_010 Hb_177208_010--Hb_000664_010 Hb_011224_030 Hb_011224_030 Hb_177208_010--Hb_011224_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94846 12.8583 475.252 3338.73 10.0013 15.0349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.9348 124.099 66.1326 77.8919 625.258

CAGE analysis