Hb_000995_020

Information

Type -
Description -
Location Contig995: 42613-42942
Sequence    

Annotation

kegg
ID rcu:RCOM_0225950
description hypothetical protein
nr
ID XP_002530166.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVZ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0225950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64820: 42307-43099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000995_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_102772_010 0.1206433559 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000622_230 0.1492035977 - - PREDICTED: uncharacterized protein LOC105642895 [Jatropha curcas]
4 Hb_000622_120 0.1557921591 - - hypothetical protein [Hevea brasiliensis]
5 Hb_006816_060 0.1575646391 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
6 Hb_003371_030 0.1580315449 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
7 Hb_000617_300 0.162865827 - - RALFL33, putative [Ricinus communis]
8 Hb_001357_220 0.1667053895 - - dopamine beta-monooxygenase, putative [Ricinus communis]
9 Hb_006916_070 0.1687063316 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
10 Hb_000521_060 0.1704026393 - - PREDICTED: protein YLS3-like [Jatropha curcas]
11 Hb_011218_010 0.1716112256 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
12 Hb_000964_120 0.1722840361 - - DNA-damage-inducible protein f, putative [Ricinus communis]
13 Hb_000389_040 0.1739770442 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
14 Hb_000155_030 0.1756283497 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
15 Hb_017061_010 0.1764514884 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
16 Hb_001006_300 0.1770144958 - - lipid binding protein, putative [Ricinus communis]
17 Hb_000920_120 0.1783943826 - - -
18 Hb_003858_070 0.1797326906 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
19 Hb_001433_230 0.1802958058 - - PREDICTED: kinesin-4-like [Jatropha curcas]
20 Hb_007292_060 0.1805605498 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]

Gene co-expression network

sample Hb_000995_020 Hb_000995_020 Hb_102772_010 Hb_102772_010 Hb_000995_020--Hb_102772_010 Hb_000622_230 Hb_000622_230 Hb_000995_020--Hb_000622_230 Hb_000622_120 Hb_000622_120 Hb_000995_020--Hb_000622_120 Hb_006816_060 Hb_006816_060 Hb_000995_020--Hb_006816_060 Hb_003371_030 Hb_003371_030 Hb_000995_020--Hb_003371_030 Hb_000617_300 Hb_000617_300 Hb_000995_020--Hb_000617_300 Hb_102772_010--Hb_000622_120 Hb_000622_190 Hb_000622_190 Hb_102772_010--Hb_000622_190 Hb_102772_010--Hb_000622_230 Hb_000115_200 Hb_000115_200 Hb_102772_010--Hb_000115_200 Hb_001433_230 Hb_001433_230 Hb_102772_010--Hb_001433_230 Hb_000622_230--Hb_000622_120 Hb_000106_010 Hb_000106_010 Hb_000622_230--Hb_000106_010 Hb_025193_010 Hb_025193_010 Hb_000622_230--Hb_025193_010 Hb_177208_010 Hb_177208_010 Hb_000622_230--Hb_177208_010 Hb_002263_050 Hb_002263_050 Hb_000622_230--Hb_002263_050 Hb_000622_120--Hb_000622_190 Hb_000622_120--Hb_000115_200 Hb_007574_040 Hb_007574_040 Hb_000622_120--Hb_007574_040 Hb_000622_120--Hb_177208_010 Hb_000521_060 Hb_000521_060 Hb_006816_060--Hb_000521_060 Hb_022250_140 Hb_022250_140 Hb_006816_060--Hb_022250_140 Hb_006816_060--Hb_001433_230 Hb_005396_020 Hb_005396_020 Hb_006816_060--Hb_005396_020 Hb_006570_170 Hb_006570_170 Hb_006816_060--Hb_006570_170 Hb_001634_050 Hb_001634_050 Hb_006816_060--Hb_001634_050 Hb_000139_460 Hb_000139_460 Hb_003371_030--Hb_000139_460 Hb_001006_300 Hb_001006_300 Hb_003371_030--Hb_001006_300 Hb_003858_070 Hb_003858_070 Hb_003371_030--Hb_003858_070 Hb_019299_020 Hb_019299_020 Hb_003371_030--Hb_019299_020 Hb_001296_010 Hb_001296_010 Hb_003371_030--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_003371_030--Hb_013399_060 Hb_003020_200 Hb_003020_200 Hb_000617_300--Hb_003020_200 Hb_003411_120 Hb_003411_120 Hb_000617_300--Hb_003411_120 Hb_001758_090 Hb_001758_090 Hb_000617_300--Hb_001758_090 Hb_000617_300--Hb_003371_030 Hb_019053_050 Hb_019053_050 Hb_000617_300--Hb_019053_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.09556 4.2404 38.7711 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19134 0.468418 1.04634 0.530408 3.42446

CAGE analysis