Hb_003411_120

Information

Type -
Description -
Location Contig3411: 164318-165806
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13670g
description POPTRDRAFT_658912; hypothetical protein
nr
ID XP_002314871.2
description hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HWJ3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13670g PE=4 SV=2
Gene Ontology
ID GO:0046872
description copper transport protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35668: 164189-166043 , PASA_asmbl_35670: 165587-165879
cDNA
(Sanger)
(ID:Location)		 002_D21.ab1: 164189-165879

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003411_120 0.0 - - hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
2 Hb_001097_080 0.1472012454 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
3 Hb_000617_300 0.1520962044 - - RALFL33, putative [Ricinus communis]
4 Hb_147137_010 0.1545634915 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
5 Hb_003371_030 0.1627783315 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
6 Hb_005914_130 0.1719944753 - - -
7 Hb_001804_020 0.1854692715 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
8 Hb_001157_120 0.1855811187 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
9 Hb_002215_020 0.1869099685 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
10 Hb_001153_070 0.1886143751 - - -
11 Hb_002150_100 0.1886382688 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Jatropha curcas]
12 Hb_001232_170 0.1893544002 - - sulfate transporter, putative [Ricinus communis]
13 Hb_000243_240 0.1897113865 - - cytochrome P450 family protein [Populus trichocarpa]
14 Hb_000331_660 0.1916296121 - - PREDICTED: vignain [Jatropha curcas]
15 Hb_000083_260 0.1918995099 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000012_340 0.1958463296 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
17 Hb_000816_170 0.1963882097 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
18 Hb_001335_040 0.19644056 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003607_040 0.1979510048 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_006889_010 0.1985499472 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003411_120 Hb_003411_120 Hb_001097_080 Hb_001097_080 Hb_003411_120--Hb_001097_080 Hb_000617_300 Hb_000617_300 Hb_003411_120--Hb_000617_300 Hb_147137_010 Hb_147137_010 Hb_003411_120--Hb_147137_010 Hb_003371_030 Hb_003371_030 Hb_003411_120--Hb_003371_030 Hb_005914_130 Hb_005914_130 Hb_003411_120--Hb_005914_130 Hb_001804_020 Hb_001804_020 Hb_003411_120--Hb_001804_020 Hb_001097_080--Hb_147137_010 Hb_007382_130 Hb_007382_130 Hb_001097_080--Hb_007382_130 Hb_000470_060 Hb_000470_060 Hb_001097_080--Hb_000470_060 Hb_012799_080 Hb_012799_080 Hb_001097_080--Hb_012799_080 Hb_016734_050 Hb_016734_050 Hb_001097_080--Hb_016734_050 Hb_003020_200 Hb_003020_200 Hb_000617_300--Hb_003020_200 Hb_001758_090 Hb_001758_090 Hb_000617_300--Hb_001758_090 Hb_000617_300--Hb_003371_030 Hb_019053_050 Hb_019053_050 Hb_000617_300--Hb_019053_050 Hb_000995_020 Hb_000995_020 Hb_000617_300--Hb_000995_020 Hb_180293_010 Hb_180293_010 Hb_147137_010--Hb_180293_010 Hb_001232_170 Hb_001232_170 Hb_147137_010--Hb_001232_170 Hb_170597_010 Hb_170597_010 Hb_147137_010--Hb_170597_010 Hb_003090_250 Hb_003090_250 Hb_147137_010--Hb_003090_250 Hb_000201_060 Hb_000201_060 Hb_147137_010--Hb_000201_060 Hb_000025_150 Hb_000025_150 Hb_147137_010--Hb_000025_150 Hb_000139_460 Hb_000139_460 Hb_003371_030--Hb_000139_460 Hb_001006_300 Hb_001006_300 Hb_003371_030--Hb_001006_300 Hb_003858_070 Hb_003858_070 Hb_003371_030--Hb_003858_070 Hb_019299_020 Hb_019299_020 Hb_003371_030--Hb_019299_020 Hb_001296_010 Hb_001296_010 Hb_003371_030--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_003371_030--Hb_013399_060 Hb_010457_040 Hb_010457_040 Hb_005914_130--Hb_010457_040 Hb_000482_080 Hb_000482_080 Hb_005914_130--Hb_000482_080 Hb_005914_130--Hb_001758_090 Hb_000291_240 Hb_000291_240 Hb_005914_130--Hb_000291_240 Hb_007311_050 Hb_007311_050 Hb_005914_130--Hb_007311_050 Hb_031822_020 Hb_031822_020 Hb_001804_020--Hb_031822_020 Hb_007441_320 Hb_007441_320 Hb_001804_020--Hb_007441_320 Hb_003607_040 Hb_003607_040 Hb_001804_020--Hb_003607_040 Hb_002701_200 Hb_002701_200 Hb_001804_020--Hb_002701_200 Hb_103942_020 Hb_103942_020 Hb_001804_020--Hb_103942_020 Hb_002215_020 Hb_002215_020 Hb_001804_020--Hb_002215_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0978448 1.70777 1.62712 66.2 0.0492736 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 4.47777 0.309318 1.84592 3.24796

CAGE analysis