Hb_001097_080

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig1097: 71396-71865
Sequence    

Annotation

kegg
ID rcu:RCOM_0905720
description triptychon and cpc, putative
nr
ID XP_002518531.1
description triptychon and cpc, putative [Ricinus communis]
swissprot
ID Q9LNI5
description MYB-like transcription factor ETC1 OS=Arabidopsis thaliana GN=ETC1 PE=2 SV=1
trembl
ID B9RXR2
description Triptychon and cpc, putative OS=Ricinus communis GN=RCOM_0905720 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-like transcription factor etc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02898: 70964-72121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001097_080 0.0 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
2 Hb_003411_120 0.1472012454 - - hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
3 Hb_147137_010 0.1575199211 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
4 Hb_007382_130 0.1743401388 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
5 Hb_000470_060 0.1853758284 - - PREDICTED: abietadienol/abietadienal oxidase [Jatropha curcas]
6 Hb_012799_080 0.1894161625 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
7 Hb_016734_050 0.1918048712 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
8 Hb_180293_010 0.1919079315 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
9 Hb_003226_130 0.1972839498 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
10 Hb_003813_010 0.2042777402 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
11 Hb_001810_040 0.204576705 - - -
12 Hb_000206_270 0.2074897427 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_002277_020 0.210786806 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
14 Hb_003371_030 0.2111446475 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
15 Hb_000710_130 0.2153666173 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_002150_100 0.2153696771 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Jatropha curcas]
17 Hb_000413_080 0.2154523457 - - -
18 Hb_000011_250 0.2183084494 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
19 Hb_000025_150 0.2197286248 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
20 Hb_005914_130 0.2199910662 - - -

Gene co-expression network

sample Hb_001097_080 Hb_001097_080 Hb_003411_120 Hb_003411_120 Hb_001097_080--Hb_003411_120 Hb_147137_010 Hb_147137_010 Hb_001097_080--Hb_147137_010 Hb_007382_130 Hb_007382_130 Hb_001097_080--Hb_007382_130 Hb_000470_060 Hb_000470_060 Hb_001097_080--Hb_000470_060 Hb_012799_080 Hb_012799_080 Hb_001097_080--Hb_012799_080 Hb_016734_050 Hb_016734_050 Hb_001097_080--Hb_016734_050 Hb_000617_300 Hb_000617_300 Hb_003411_120--Hb_000617_300 Hb_003411_120--Hb_147137_010 Hb_003371_030 Hb_003371_030 Hb_003411_120--Hb_003371_030 Hb_005914_130 Hb_005914_130 Hb_003411_120--Hb_005914_130 Hb_001804_020 Hb_001804_020 Hb_003411_120--Hb_001804_020 Hb_180293_010 Hb_180293_010 Hb_147137_010--Hb_180293_010 Hb_001232_170 Hb_001232_170 Hb_147137_010--Hb_001232_170 Hb_170597_010 Hb_170597_010 Hb_147137_010--Hb_170597_010 Hb_003090_250 Hb_003090_250 Hb_147137_010--Hb_003090_250 Hb_000201_060 Hb_000201_060 Hb_147137_010--Hb_000201_060 Hb_000025_150 Hb_000025_150 Hb_147137_010--Hb_000025_150 Hb_003226_130 Hb_003226_130 Hb_007382_130--Hb_003226_130 Hb_000413_080 Hb_000413_080 Hb_007382_130--Hb_000413_080 Hb_000164_010 Hb_000164_010 Hb_007382_130--Hb_000164_010 Hb_005227_050 Hb_005227_050 Hb_007382_130--Hb_005227_050 Hb_007382_130--Hb_003411_120 Hb_000188_140 Hb_000188_140 Hb_000470_060--Hb_000188_140 Hb_000470_060--Hb_180293_010 Hb_002053_020 Hb_002053_020 Hb_000470_060--Hb_002053_020 Hb_000152_630 Hb_000152_630 Hb_000470_060--Hb_000152_630 Hb_000206_270 Hb_000206_270 Hb_000470_060--Hb_000206_270 Hb_000230_220 Hb_000230_220 Hb_000470_060--Hb_000230_220 Hb_000347_210 Hb_000347_210 Hb_012799_080--Hb_000347_210 Hb_012799_080--Hb_016734_050 Hb_029508_020 Hb_029508_020 Hb_012799_080--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_012799_080--Hb_000541_030 Hb_015175_060 Hb_015175_060 Hb_012799_080--Hb_015175_060 Hb_119808_020 Hb_119808_020 Hb_012799_080--Hb_119808_020 Hb_016734_050--Hb_015175_060 Hb_016734_050--Hb_000541_030 Hb_016734_050--Hb_029508_020 Hb_056718_010 Hb_056718_010 Hb_016734_050--Hb_056718_010 Hb_001246_080 Hb_001246_080 Hb_016734_050--Hb_001246_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.436402 4.98991 3.82136 67.1903 0.46197 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 7.19176 0 0.676451 1.78859

CAGE analysis