Hb_012799_080

Information

Type transcription factor
Description TF Family: MYB
Location Contig12799: 35081-37627
Sequence    

Annotation

kegg
ID tcc:TCM_015157
description Myb domain protein 18, putative
nr
ID XP_007038672.1
description Myb domain protein 18, putative [Theobroma cacao]
swissprot
ID Q9M0K4
description Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2
trembl
ID A0A061G1E1
description Myb domain protein 18, putative OS=Theobroma cacao GN=TCM_015157 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor laf1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_080 0.0 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
2 Hb_000347_210 0.1220876111 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
3 Hb_016734_050 0.1573693264 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
4 Hb_029508_020 0.1614705934 - - -
5 Hb_000541_030 0.1665145423 - - conserved hypothetical protein [Ricinus communis]
6 Hb_015175_060 0.1671668273 - - copper transport protein atox1, putative [Ricinus communis]
7 Hb_119808_020 0.1710378235 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
8 Hb_000224_050 0.1743031421 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000896_070 0.1805846956 - - ammonium transporter, putative [Ricinus communis]
10 Hb_001246_080 0.1826652977 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
11 Hb_003050_210 0.1873962523 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
12 Hb_002235_330 0.1874170704 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
13 Hb_000381_140 0.1881678202 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
14 Hb_001097_080 0.1894161625 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
15 Hb_007292_020 0.1922434089 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
16 Hb_000277_040 0.1927522141 - - -
17 Hb_034310_020 0.1933020373 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
18 Hb_002186_120 0.1938433446 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
19 Hb_000053_150 0.1940494203 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
20 Hb_007426_100 0.194136115 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012799_080 Hb_012799_080 Hb_000347_210 Hb_000347_210 Hb_012799_080--Hb_000347_210 Hb_016734_050 Hb_016734_050 Hb_012799_080--Hb_016734_050 Hb_029508_020 Hb_029508_020 Hb_012799_080--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_012799_080--Hb_000541_030 Hb_015175_060 Hb_015175_060 Hb_012799_080--Hb_015175_060 Hb_119808_020 Hb_119808_020 Hb_012799_080--Hb_119808_020 Hb_000347_210--Hb_029508_020 Hb_000347_210--Hb_000541_030 Hb_091537_010 Hb_091537_010 Hb_000347_210--Hb_091537_010 Hb_000896_070 Hb_000896_070 Hb_000347_210--Hb_000896_070 Hb_000347_210--Hb_119808_020 Hb_016734_050--Hb_015175_060 Hb_016734_050--Hb_000541_030 Hb_016734_050--Hb_029508_020 Hb_056718_010 Hb_056718_010 Hb_016734_050--Hb_056718_010 Hb_001246_080 Hb_001246_080 Hb_016734_050--Hb_001246_080 Hb_029508_020--Hb_000541_030 Hb_029508_020--Hb_091537_010 Hb_029508_020--Hb_119808_020 Hb_001102_310 Hb_001102_310 Hb_029508_020--Hb_001102_310 Hb_000541_030--Hb_091537_010 Hb_000541_030--Hb_119808_020 Hb_014508_020 Hb_014508_020 Hb_000541_030--Hb_014508_020 Hb_015175_060--Hb_056718_010 Hb_013654_030 Hb_013654_030 Hb_015175_060--Hb_013654_030 Hb_015175_060--Hb_001246_080 Hb_010812_080 Hb_010812_080 Hb_015175_060--Hb_010812_080 Hb_001541_220 Hb_001541_220 Hb_119808_020--Hb_001541_220 Hb_119808_020--Hb_091537_010 Hb_119808_020--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0204626 0.0940594 0.696082 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0442024 0 0.0178137 0

CAGE analysis