Hb_001102_310

Information

Type -
Description -
Location Contig1102: 279220-279660
Sequence    

Annotation

kegg
ID rcu:RCOM_0107340
description Protein AFR, putative
nr
ID XP_002524541.1
description Protein AFR, putative [Ricinus communis]
swissprot
ID Q8LAW2
description F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2
trembl
ID B9SEX2
description Protein AFR, putative OS=Ricinus communis GN=RCOM_0107340 PE=4 SV=1
Gene Ontology
ID GO:0050896
description f-box protein afr-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_310 0.0 - - Protein AFR, putative [Ricinus communis]
2 Hb_091537_010 0.0564158355 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
3 Hb_002367_030 0.142426502 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
4 Hb_003540_180 0.1427849805 - - -
5 Hb_029508_020 0.1461131209 - - -
6 Hb_000541_030 0.1601605644 - - conserved hypothetical protein [Ricinus communis]
7 Hb_017400_010 0.1829846862 - - unnamed protein product [Vitis vinifera]
8 Hb_000347_210 0.1862974706 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
9 Hb_119808_020 0.1884841348 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
10 Hb_001153_070 0.205500196 - - -
11 Hb_019818_010 0.2073210599 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
12 Hb_094529_020 0.2183936269 - - leucine-rich repeat containing protein, putative [Ricinus communis]
13 Hb_033153_080 0.2225833751 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
14 Hb_016734_050 0.2291612414 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
15 Hb_012092_070 0.2349107472 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
16 Hb_001085_140 0.2356225965 - - conserved hypothetical protein [Ricinus communis]
17 Hb_067034_020 0.2373000481 - - PREDICTED: iridoid synthase [Jatropha curcas]
18 Hb_012799_080 0.237504819 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
19 Hb_001628_040 0.2381018376 - - PREDICTED: beta-galactosidase 13-like [Populus euphratica]
20 Hb_001541_220 0.2386860629 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]

Gene co-expression network

sample Hb_001102_310 Hb_001102_310 Hb_091537_010 Hb_091537_010 Hb_001102_310--Hb_091537_010 Hb_002367_030 Hb_002367_030 Hb_001102_310--Hb_002367_030 Hb_003540_180 Hb_003540_180 Hb_001102_310--Hb_003540_180 Hb_029508_020 Hb_029508_020 Hb_001102_310--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_001102_310--Hb_000541_030 Hb_017400_010 Hb_017400_010 Hb_001102_310--Hb_017400_010 Hb_091537_010--Hb_029508_020 Hb_091537_010--Hb_000541_030 Hb_000347_210 Hb_000347_210 Hb_091537_010--Hb_000347_210 Hb_119808_020 Hb_119808_020 Hb_091537_010--Hb_119808_020 Hb_091537_010--Hb_003540_180 Hb_002367_030--Hb_017400_010 Hb_002367_030--Hb_003540_180 Hb_019818_010 Hb_019818_010 Hb_002367_030--Hb_019818_010 Hb_012092_070 Hb_012092_070 Hb_002367_030--Hb_012092_070 Hb_002367_030--Hb_091537_010 Hb_003540_180--Hb_017400_010 Hb_033153_080 Hb_033153_080 Hb_003540_180--Hb_033153_080 Hb_001628_040 Hb_001628_040 Hb_003540_180--Hb_001628_040 Hb_029508_020--Hb_000541_030 Hb_029508_020--Hb_000347_210 Hb_029508_020--Hb_119808_020 Hb_016734_050 Hb_016734_050 Hb_029508_020--Hb_016734_050 Hb_000541_030--Hb_000347_210 Hb_000541_030--Hb_119808_020 Hb_000541_030--Hb_016734_050 Hb_014508_020 Hb_014508_020 Hb_000541_030--Hb_014508_020 Hb_017400_010--Hb_019818_010 Hb_017400_010--Hb_012092_070 Hb_132840_120 Hb_132840_120 Hb_017400_010--Hb_132840_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0588408 1.34489 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.261346 0 0 0

CAGE analysis