Hb_014508_020

Information

Type -
Description -
Location Contig14508: 8632-18490
Sequence    

Annotation

kegg
ID pop:POPTR_0067s00200g
description hypothetical protein
nr
ID XP_012080880.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
swissprot
ID C0LGG8
description Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1
trembl
ID A0A067KFH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16252 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11717: 10749-11464 , PASA_asmbl_11718: 9289-10916 , PASA_asmbl_11719: 11195-11678 , PASA_asmbl_11722: 15308-16092
cDNA
(Sanger)
(ID:Location)		 026_J07.ab1: 10751-11464

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014508_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
2 Hb_002028_250 0.0435771503 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
3 Hb_000389_120 0.0473848655 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
4 Hb_099538_020 0.0486844023 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
5 Hb_010261_070 0.0486844866 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
6 Hb_005914_190 0.0489088601 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
7 Hb_002289_160 0.0491552289 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_027136_030 0.0492175338 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_149495_010 0.0492935321 - - putative starch phosphorylase, partial [Sorghum bicolor]
10 Hb_003874_030 0.0501260016 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
11 Hb_002601_030 0.0511037211 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
12 Hb_049573_010 0.0515860977 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002757_020 0.0524501887 - - -
14 Hb_001922_140 0.0525189149 - - conserved hypothetical protein [Ricinus communis]
15 Hb_178734_010 0.0530418251 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
16 Hb_003424_040 0.0530747783 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
17 Hb_157950_010 0.0536030738 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
18 Hb_073680_010 0.0536503819 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
19 Hb_002783_290 0.0542920474 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
20 Hb_118730_050 0.054349783 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]

Gene co-expression network

sample Hb_014508_020 Hb_014508_020 Hb_002028_250 Hb_002028_250 Hb_014508_020--Hb_002028_250 Hb_000389_120 Hb_000389_120 Hb_014508_020--Hb_000389_120 Hb_099538_020 Hb_099538_020 Hb_014508_020--Hb_099538_020 Hb_010261_070 Hb_010261_070 Hb_014508_020--Hb_010261_070 Hb_005914_190 Hb_005914_190 Hb_014508_020--Hb_005914_190 Hb_002289_160 Hb_002289_160 Hb_014508_020--Hb_002289_160 Hb_000375_210 Hb_000375_210 Hb_002028_250--Hb_000375_210 Hb_002757_020 Hb_002757_020 Hb_002028_250--Hb_002757_020 Hb_002028_250--Hb_000389_120 Hb_002028_250--Hb_002289_160 Hb_027136_030 Hb_027136_030 Hb_002028_250--Hb_027136_030 Hb_002601_030 Hb_002601_030 Hb_000389_120--Hb_002601_030 Hb_118730_050 Hb_118730_050 Hb_000389_120--Hb_118730_050 Hb_002783_290 Hb_002783_290 Hb_000389_120--Hb_002783_290 Hb_000194_040 Hb_000194_040 Hb_000389_120--Hb_000194_040 Hb_054865_110 Hb_054865_110 Hb_000389_120--Hb_054865_110 Hb_178734_010 Hb_178734_010 Hb_000389_120--Hb_178734_010 Hb_099538_020--Hb_010261_070 Hb_099538_020--Hb_002289_160 Hb_099538_020--Hb_005914_190 Hb_099538_020--Hb_027136_030 Hb_149495_010 Hb_149495_010 Hb_099538_020--Hb_149495_010 Hb_003874_030 Hb_003874_030 Hb_099538_020--Hb_003874_030 Hb_010261_070--Hb_005914_190 Hb_010261_070--Hb_002289_160 Hb_010261_070--Hb_027136_030 Hb_010261_070--Hb_149495_010 Hb_010261_070--Hb_003874_030 Hb_005914_190--Hb_003874_030 Hb_005914_190--Hb_002289_160 Hb_005914_190--Hb_027136_030 Hb_049573_010 Hb_049573_010 Hb_005914_190--Hb_049573_010 Hb_002289_160--Hb_027136_030 Hb_002289_160--Hb_149495_010 Hb_001922_140 Hb_001922_140 Hb_002289_160--Hb_001922_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00595848 1.80318 20.3844 0 0.013529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0258324 0 0.00512662 0.0549914

CAGE analysis