Hb_002601_030

Information

Type -
Description -
Location Contig2601: 3735-4881
Sequence    

Annotation

kegg
ID rcu:RCOM_0897630
description hypothetical protein
nr
ID XP_012073252.1
description PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06196 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27108: 3512-6597 , PASA_asmbl_27109: 3512-6597
cDNA
(Sanger)
(ID:Location)		 030_C06.ab1: 4526-6597

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002601_030 0.0 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
2 Hb_000389_120 0.0266522787 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
3 Hb_000194_040 0.0283223864 - - carbonic anhydrase, putative [Ricinus communis]
4 Hb_054865_110 0.0284246382 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000628_090 0.0287370509 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
6 Hb_111442_010 0.0306695191 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
7 Hb_118730_050 0.0312299192 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
8 Hb_002783_290 0.0312903722 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
9 Hb_000422_100 0.0319934055 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
10 Hb_001347_020 0.0326488526 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
11 Hb_178734_010 0.0327829691 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
12 Hb_049573_010 0.0350826893 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003874_030 0.0384296461 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
14 Hb_130357_010 0.0392949049 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_003729_040 0.0423856091 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_005914_190 0.0437028437 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
17 Hb_010261_070 0.0465948012 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
18 Hb_069237_010 0.0469622225 - - -
19 Hb_099538_020 0.0484521831 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
20 Hb_014508_020 0.0511037211 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002601_030 Hb_002601_030 Hb_000389_120 Hb_000389_120 Hb_002601_030--Hb_000389_120 Hb_000194_040 Hb_000194_040 Hb_002601_030--Hb_000194_040 Hb_054865_110 Hb_054865_110 Hb_002601_030--Hb_054865_110 Hb_000628_090 Hb_000628_090 Hb_002601_030--Hb_000628_090 Hb_111442_010 Hb_111442_010 Hb_002601_030--Hb_111442_010 Hb_118730_050 Hb_118730_050 Hb_002601_030--Hb_118730_050 Hb_000389_120--Hb_118730_050 Hb_002783_290 Hb_002783_290 Hb_000389_120--Hb_002783_290 Hb_000389_120--Hb_000194_040 Hb_000389_120--Hb_054865_110 Hb_178734_010 Hb_178734_010 Hb_000389_120--Hb_178734_010 Hb_000194_040--Hb_054865_110 Hb_000194_040--Hb_000628_090 Hb_000194_040--Hb_111442_010 Hb_000422_100 Hb_000422_100 Hb_000194_040--Hb_000422_100 Hb_001347_020 Hb_001347_020 Hb_000194_040--Hb_001347_020 Hb_000194_040--Hb_118730_050 Hb_054865_110--Hb_000628_090 Hb_054865_110--Hb_111442_010 Hb_054865_110--Hb_000422_100 Hb_054865_110--Hb_001347_020 Hb_054865_110--Hb_118730_050 Hb_000628_090--Hb_111442_010 Hb_000628_090--Hb_000422_100 Hb_000628_090--Hb_001347_020 Hb_130357_010 Hb_130357_010 Hb_000628_090--Hb_130357_010 Hb_111442_010--Hb_000422_100 Hb_111442_010--Hb_001347_020 Hb_111442_010--Hb_130357_010 Hb_118730_050--Hb_002783_290 Hb_118730_050--Hb_178734_010 Hb_049573_010 Hb_049573_010 Hb_118730_050--Hb_049573_010 Hb_003874_030 Hb_003874_030 Hb_118730_050--Hb_003874_030 Hb_005914_190 Hb_005914_190 Hb_118730_050--Hb_005914_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.057556 7.3338 118.785 0 0.0513746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0846129

CAGE analysis