Hb_002757_020

Information

Type -
Description -
Location Contig2757: 4566-5880
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID M0ZGI8
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000110 PE=4 SV=1
Gene Ontology
ID GO:0004144
description o-acyltransferase wsd1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002757_020 0.0 - - -
2 Hb_000375_210 0.048708296 - - -
3 Hb_002028_250 0.0499417305 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
4 Hb_000389_120 0.0524342644 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
5 Hb_014508_020 0.0524501887 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
6 Hb_000431_040 0.0632428912 - - PREDICTED: uncharacterized protein LOC105635551 [Jatropha curcas]
7 Hb_005914_190 0.0690794981 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
8 Hb_010261_070 0.0691610198 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
9 Hb_099538_020 0.0693102327 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
10 Hb_003874_030 0.0694804958 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
11 Hb_002289_160 0.0700115358 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_002601_030 0.0700678513 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
13 Hb_027136_030 0.0700829582 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_149495_010 0.0701680242 - - putative starch phosphorylase, partial [Sorghum bicolor]
15 Hb_049573_010 0.0702115936 - - conserved hypothetical protein [Ricinus communis]
16 Hb_178734_010 0.0710329946 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
17 Hb_002783_290 0.0717830717 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
18 Hb_118730_050 0.0718185045 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
19 Hb_001922_140 0.0732016599 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003424_040 0.0736880939 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_002757_020 Hb_002757_020 Hb_000375_210 Hb_000375_210 Hb_002757_020--Hb_000375_210 Hb_002028_250 Hb_002028_250 Hb_002757_020--Hb_002028_250 Hb_000389_120 Hb_000389_120 Hb_002757_020--Hb_000389_120 Hb_014508_020 Hb_014508_020 Hb_002757_020--Hb_014508_020 Hb_000431_040 Hb_000431_040 Hb_002757_020--Hb_000431_040 Hb_005914_190 Hb_005914_190 Hb_002757_020--Hb_005914_190 Hb_000375_210--Hb_002028_250 Hb_000375_210--Hb_000389_120 Hb_000375_210--Hb_000431_040 Hb_000375_210--Hb_014508_020 Hb_002601_030 Hb_002601_030 Hb_000375_210--Hb_002601_030 Hb_002028_250--Hb_014508_020 Hb_002028_250--Hb_000389_120 Hb_002289_160 Hb_002289_160 Hb_002028_250--Hb_002289_160 Hb_027136_030 Hb_027136_030 Hb_002028_250--Hb_027136_030 Hb_000389_120--Hb_002601_030 Hb_118730_050 Hb_118730_050 Hb_000389_120--Hb_118730_050 Hb_002783_290 Hb_002783_290 Hb_000389_120--Hb_002783_290 Hb_000194_040 Hb_000194_040 Hb_000389_120--Hb_000194_040 Hb_054865_110 Hb_054865_110 Hb_000389_120--Hb_054865_110 Hb_178734_010 Hb_178734_010 Hb_000389_120--Hb_178734_010 Hb_014508_020--Hb_000389_120 Hb_099538_020 Hb_099538_020 Hb_014508_020--Hb_099538_020 Hb_010261_070 Hb_010261_070 Hb_014508_020--Hb_010261_070 Hb_014508_020--Hb_005914_190 Hb_014508_020--Hb_002289_160 Hb_000431_040--Hb_000389_120 Hb_000431_040--Hb_002601_030 Hb_130357_010 Hb_130357_010 Hb_000431_040--Hb_130357_010 Hb_003729_040 Hb_003729_040 Hb_000431_040--Hb_003729_040 Hb_005914_190--Hb_010261_070 Hb_005914_190--Hb_099538_020 Hb_003874_030 Hb_003874_030 Hb_005914_190--Hb_003874_030 Hb_005914_190--Hb_002289_160 Hb_005914_190--Hb_027136_030 Hb_049573_010 Hb_049573_010 Hb_005914_190--Hb_049573_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 13.5516 159.343 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.66019

CAGE analysis