Hb_003540_180

Information

Type -
Description -
Location Contig3540: 110590-111691
Sequence    

Annotation

kegg
ID csv:101208489
description pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36713: 110923-111821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_180 0.0 - - -
2 Hb_002367_030 0.0994155113 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
3 Hb_001102_310 0.1427849805 - - Protein AFR, putative [Ricinus communis]
4 Hb_091537_010 0.1562003319 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_017400_010 0.1754918514 - - unnamed protein product [Vitis vinifera]
6 Hb_033153_080 0.1806205346 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
7 Hb_001628_040 0.1961684904 - - PREDICTED: beta-galactosidase 13-like [Populus euphratica]
8 Hb_001085_140 0.2032403715 - - conserved hypothetical protein [Ricinus communis]
9 Hb_029508_020 0.2076684384 - - -
10 Hb_000541_030 0.2081126082 - - conserved hypothetical protein [Ricinus communis]
11 Hb_019818_010 0.2089966185 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
12 Hb_001153_070 0.216938943 - - -
13 Hb_007210_010 0.2173910611 - - -
14 Hb_094529_020 0.2330423214 - - leucine-rich repeat containing protein, putative [Ricinus communis]
15 Hb_000347_210 0.2384195077 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
16 Hb_002686_100 0.2390141072 - - -
17 Hb_005408_110 0.2410002952 - - purine permease, putative [Ricinus communis]
18 Hb_012092_070 0.243639765 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
19 Hb_005097_010 0.2482546651 - - PREDICTED: aluminum-activated malate transporter 7-like isoform X1 [Populus euphratica]
20 Hb_000160_050 0.2498482902 - - hypothetical protein JCGZ_02516 [Jatropha curcas]

Gene co-expression network

sample Hb_003540_180 Hb_003540_180 Hb_002367_030 Hb_002367_030 Hb_003540_180--Hb_002367_030 Hb_001102_310 Hb_001102_310 Hb_003540_180--Hb_001102_310 Hb_091537_010 Hb_091537_010 Hb_003540_180--Hb_091537_010 Hb_017400_010 Hb_017400_010 Hb_003540_180--Hb_017400_010 Hb_033153_080 Hb_033153_080 Hb_003540_180--Hb_033153_080 Hb_001628_040 Hb_001628_040 Hb_003540_180--Hb_001628_040 Hb_002367_030--Hb_017400_010 Hb_019818_010 Hb_019818_010 Hb_002367_030--Hb_019818_010 Hb_002367_030--Hb_001102_310 Hb_012092_070 Hb_012092_070 Hb_002367_030--Hb_012092_070 Hb_002367_030--Hb_091537_010 Hb_001102_310--Hb_091537_010 Hb_029508_020 Hb_029508_020 Hb_001102_310--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_001102_310--Hb_000541_030 Hb_001102_310--Hb_017400_010 Hb_091537_010--Hb_029508_020 Hb_091537_010--Hb_000541_030 Hb_000347_210 Hb_000347_210 Hb_091537_010--Hb_000347_210 Hb_119808_020 Hb_119808_020 Hb_091537_010--Hb_119808_020 Hb_017400_010--Hb_019818_010 Hb_017400_010--Hb_012092_070 Hb_132840_120 Hb_132840_120 Hb_017400_010--Hb_132840_120 Hb_000160_050 Hb_000160_050 Hb_033153_080--Hb_000160_050 Hb_094529_020 Hb_094529_020 Hb_033153_080--Hb_094529_020 Hb_004947_010 Hb_004947_010 Hb_033153_080--Hb_004947_010 Hb_016875_010 Hb_016875_010 Hb_033153_080--Hb_016875_010 Hb_033153_080--Hb_002367_030 Hb_118941_010 Hb_118941_010 Hb_001628_040--Hb_118941_010 Hb_000027_020 Hb_000027_020 Hb_001628_040--Hb_000027_020 Hb_001277_390 Hb_001277_390 Hb_001628_040--Hb_001277_390 Hb_001247_050 Hb_001247_050 Hb_001628_040--Hb_001247_050 Hb_007210_010 Hb_007210_010 Hb_001628_040--Hb_007210_010 Hb_008535_020 Hb_008535_020 Hb_001628_040--Hb_008535_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 6.88526 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.951337 0 0 0

CAGE analysis