Hb_001247_050

Information

Type -
Description -
Location Contig1247: 31293-34370
Sequence    

Annotation

kegg
ID rcu:RCOM_1436050
description Auxin-induced protein 5NG4, putative
nr
ID XP_012088853.1
description PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
swissprot
ID Q8GXB4
description WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1
trembl
ID A0A067JUZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23192 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at1g09380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_050 0.0 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
2 Hb_008535_020 0.0340936368 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
3 Hb_001277_390 0.0804734293 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
4 Hb_000224_070 0.0869056431 - - -
5 Hb_118941_010 0.0892019136 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_120496_010 0.0983590344 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
7 Hb_069237_010 0.0989361696 - - -
8 Hb_003729_040 0.0990957076 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_002701_200 0.0992527984 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
10 Hb_130357_010 0.0994227074 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
11 Hb_000258_010 0.0997197702 - - lipid transfer precursor protein [Hevea brasiliensis]
12 Hb_005976_030 0.1004727956 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
13 Hb_001347_020 0.101010209 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
14 Hb_000422_100 0.1012725894 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
15 Hb_111442_010 0.1019123639 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
16 Hb_002601_030 0.1030916451 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
17 Hb_000628_090 0.103356965 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
18 Hb_001892_040 0.103469561 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
19 Hb_054865_110 0.103726569 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000194_040 0.1038669033 - - carbonic anhydrase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001247_050 Hb_001247_050 Hb_008535_020 Hb_008535_020 Hb_001247_050--Hb_008535_020 Hb_001277_390 Hb_001277_390 Hb_001247_050--Hb_001277_390 Hb_000224_070 Hb_000224_070 Hb_001247_050--Hb_000224_070 Hb_118941_010 Hb_118941_010 Hb_001247_050--Hb_118941_010 Hb_120496_010 Hb_120496_010 Hb_001247_050--Hb_120496_010 Hb_069237_010 Hb_069237_010 Hb_001247_050--Hb_069237_010 Hb_008535_020--Hb_001277_390 Hb_008535_020--Hb_118941_010 Hb_008535_020--Hb_000224_070 Hb_002701_200 Hb_002701_200 Hb_008535_020--Hb_002701_200 Hb_005976_030 Hb_005976_030 Hb_008535_020--Hb_005976_030 Hb_001277_390--Hb_118941_010 Hb_001277_390--Hb_000224_070 Hb_001277_390--Hb_120496_010 Hb_001591_020 Hb_001591_020 Hb_001277_390--Hb_001591_020 Hb_000733_170 Hb_000733_170 Hb_001277_390--Hb_000733_170 Hb_001892_040 Hb_001892_040 Hb_001277_390--Hb_001892_040 Hb_000224_070--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000224_070--Hb_000645_040 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_000224_070--Hb_120496_010 Hb_000224_070--Hb_001892_040 Hb_000027_020 Hb_000027_020 Hb_118941_010--Hb_000027_020 Hb_153199_010 Hb_153199_010 Hb_118941_010--Hb_153199_010 Hb_007432_040 Hb_007432_040 Hb_118941_010--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_118941_010--Hb_004032_170 Hb_000203_110 Hb_000203_110 Hb_120496_010--Hb_000203_110 Hb_003747_080 Hb_003747_080 Hb_120496_010--Hb_003747_080 Hb_120496_010--Hb_118941_010 Hb_007441_320 Hb_007441_320 Hb_120496_010--Hb_007441_320 Hb_003729_040 Hb_003729_040 Hb_069237_010--Hb_003729_040 Hb_130357_010 Hb_130357_010 Hb_069237_010--Hb_130357_010 Hb_000258_010 Hb_000258_010 Hb_069237_010--Hb_000258_010 Hb_069237_010--Hb_005976_030 Hb_001347_020 Hb_001347_020 Hb_069237_010--Hb_001347_020 Hb_000422_100 Hb_000422_100 Hb_069237_010--Hb_000422_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0651958 0.271961 6.68397 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0406922 0.032009 0 0 0

CAGE analysis