Hb_002701_200

Information

Type -
Description -
Location Contig2701: 189784-192522
Sequence    

Annotation

kegg
ID rcu:RCOM_0917650
description Protein COBRA precursor, putative
nr
ID XP_012088160.1
description PREDICTED: COBRA-like protein 4 [Jatropha curcas]
swissprot
ID Q9LFW3
description COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2
trembl
ID A0A067JK88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25583 PE=4 SV=1
Gene Ontology
ID GO:0005774
description cobra-like 4 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28338: 190578-190738 , PASA_asmbl_28339: 191110-191748 , PASA_asmbl_28340: 192147-192515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_200 0.0 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
2 Hb_000628_080 0.0880950644 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
3 Hb_000905_130 0.091314849 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
4 Hb_000270_590 0.0918737105 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
5 Hb_001804_020 0.0990673437 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
6 Hb_001247_050 0.0992527984 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
7 Hb_000296_030 0.1018653105 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
8 Hb_103942_020 0.1042905237 - - unknown [Zea mays]
9 Hb_006618_060 0.1047307425 - - PREDICTED: 21 kDa protein [Jatropha curcas]
10 Hb_003050_210 0.1057175962 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
11 Hb_017524_020 0.1061857742 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
12 Hb_031822_020 0.1061913124 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
13 Hb_008535_020 0.1066325462 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
14 Hb_000331_660 0.1067439062 - - PREDICTED: vignain [Jatropha curcas]
15 Hb_000224_070 0.1111342988 - - -
16 Hb_006846_050 0.1137851842 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_000381_140 0.11713718 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
18 Hb_001454_030 0.1177652122 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
19 Hb_011689_090 0.1182177388 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
20 Hb_007441_320 0.1195582828 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]

Gene co-expression network

sample Hb_002701_200 Hb_002701_200 Hb_000628_080 Hb_000628_080 Hb_002701_200--Hb_000628_080 Hb_000905_130 Hb_000905_130 Hb_002701_200--Hb_000905_130 Hb_000270_590 Hb_000270_590 Hb_002701_200--Hb_000270_590 Hb_001804_020 Hb_001804_020 Hb_002701_200--Hb_001804_020 Hb_001247_050 Hb_001247_050 Hb_002701_200--Hb_001247_050 Hb_000296_030 Hb_000296_030 Hb_002701_200--Hb_000296_030 Hb_103942_020 Hb_103942_020 Hb_000628_080--Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_000628_080--Hb_001454_030 Hb_017524_020 Hb_017524_020 Hb_000628_080--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_000628_080--Hb_001277_390 Hb_000628_080--Hb_000905_130 Hb_006618_060 Hb_006618_060 Hb_000628_080--Hb_006618_060 Hb_000905_130--Hb_000270_590 Hb_000375_210 Hb_000375_210 Hb_000905_130--Hb_000375_210 Hb_003050_210 Hb_003050_210 Hb_000905_130--Hb_003050_210 Hb_000905_130--Hb_000296_030 Hb_006846_050 Hb_006846_050 Hb_000905_130--Hb_006846_050 Hb_000270_590--Hb_003050_210 Hb_000270_590--Hb_000296_030 Hb_000381_140 Hb_000381_140 Hb_000270_590--Hb_000381_140 Hb_000270_590--Hb_017524_020 Hb_031822_020 Hb_031822_020 Hb_001804_020--Hb_031822_020 Hb_007441_320 Hb_007441_320 Hb_001804_020--Hb_007441_320 Hb_003607_040 Hb_003607_040 Hb_001804_020--Hb_003607_040 Hb_001804_020--Hb_103942_020 Hb_002215_020 Hb_002215_020 Hb_001804_020--Hb_002215_020 Hb_008535_020 Hb_008535_020 Hb_001247_050--Hb_008535_020 Hb_001247_050--Hb_001277_390 Hb_000224_070 Hb_000224_070 Hb_001247_050--Hb_000224_070 Hb_118941_010 Hb_118941_010 Hb_001247_050--Hb_118941_010 Hb_120496_010 Hb_120496_010 Hb_001247_050--Hb_120496_010 Hb_069237_010 Hb_069237_010 Hb_001247_050--Hb_069237_010 Hb_000269_050 Hb_000269_050 Hb_000296_030--Hb_000269_050 Hb_000296_030--Hb_000224_070 Hb_001597_040 Hb_001597_040 Hb_000296_030--Hb_001597_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0180995 0.253561 0.498918 13.9491 0.0136271 0.0402438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0663269 0.0782695 0 0.0833737 0.108917

CAGE analysis