Hb_103942_020

Information

Type -
Description -
Location Contig103942: 7855-8227
Sequence    

Annotation

kegg
ID shr:100916553
description ras-related protein Rap-2a-like
nr
ID ACF86160.1
description unknown [Zea mays]
swissprot
ID -
description -
trembl
ID B4FVL7
description Uncharacterized protein OS=Zea mays GN=pco128668 PE=2 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabc2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01448: 7384-10598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103942_020 0.0 - - unknown [Zea mays]
2 Hb_001454_030 0.0348629573 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
3 Hb_007441_320 0.0507055629 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
4 Hb_000628_080 0.0661330708 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
5 Hb_003607_040 0.0741266492 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_000012_340 0.0829713643 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
7 Hb_002186_190 0.0843476872 - - -
8 Hb_001634_070 0.0867278273 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000331_660 0.0910352739 - - PREDICTED: vignain [Jatropha curcas]
10 Hb_002215_020 0.0940583646 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
11 Hb_001123_080 0.094547494 - - conserved hypothetical protein [Ricinus communis]
12 Hb_017524_020 0.0978912319 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
13 Hb_005539_330 0.0983371594 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
14 Hb_001597_040 0.098392093 - - -
15 Hb_011689_090 0.0986076743 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
16 Hb_006452_080 0.0997444153 - - Nodulin, putative [Ricinus communis]
17 Hb_005183_090 0.1003676991 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
18 Hb_120496_010 0.1015591706 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
19 Hb_006846_050 0.1026918769 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_001804_020 0.1031562853 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]

Gene co-expression network

sample Hb_103942_020 Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_103942_020--Hb_001454_030 Hb_007441_320 Hb_007441_320 Hb_103942_020--Hb_007441_320 Hb_000628_080 Hb_000628_080 Hb_103942_020--Hb_000628_080 Hb_003607_040 Hb_003607_040 Hb_103942_020--Hb_003607_040 Hb_000012_340 Hb_000012_340 Hb_103942_020--Hb_000012_340 Hb_002186_190 Hb_002186_190 Hb_103942_020--Hb_002186_190 Hb_001454_030--Hb_007441_320 Hb_001454_030--Hb_000628_080 Hb_001634_070 Hb_001634_070 Hb_001454_030--Hb_001634_070 Hb_001454_030--Hb_002186_190 Hb_001454_030--Hb_003607_040 Hb_007441_320--Hb_003607_040 Hb_000527_090 Hb_000527_090 Hb_007441_320--Hb_000527_090 Hb_120496_010 Hb_120496_010 Hb_007441_320--Hb_120496_010 Hb_006452_080 Hb_006452_080 Hb_007441_320--Hb_006452_080 Hb_017524_020 Hb_017524_020 Hb_000628_080--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_000628_080--Hb_001277_390 Hb_000905_130 Hb_000905_130 Hb_000628_080--Hb_000905_130 Hb_006618_060 Hb_006618_060 Hb_000628_080--Hb_006618_060 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_116679_010 Hb_116679_010 Hb_003607_040--Hb_116679_010 Hb_003607_040--Hb_000012_340 Hb_000358_070 Hb_000358_070 Hb_003607_040--Hb_000358_070 Hb_000816_170 Hb_000816_170 Hb_003607_040--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_003607_040--Hb_029508_050 Hb_000012_340--Hb_000816_170 Hb_001401_130 Hb_001401_130 Hb_000012_340--Hb_001401_130 Hb_001123_080 Hb_001123_080 Hb_000012_340--Hb_001123_080 Hb_005539_330 Hb_005539_330 Hb_000012_340--Hb_005539_330 Hb_000012_340--Hb_002186_190 Hb_000429_070 Hb_000429_070 Hb_002186_190--Hb_000429_070 Hb_002186_190--Hb_001401_130 Hb_000637_090 Hb_000637_090 Hb_002186_190--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_002186_190--Hb_007677_010 Hb_009470_010 Hb_009470_010 Hb_002186_190--Hb_009470_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.587789 27.2916 19.0939 1253.05 0.590419 0.402729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.481301 0 0 0.710163 21.0134

CAGE analysis