Hb_006452_080

Information

Type -
Description -
Location Contig6452: 45746-46426
Sequence    

Annotation

kegg
ID rcu:RCOM_0490090
description Nodulin, putative
nr
ID XP_002530510.1
description Nodulin, putative [Ricinus communis]
swissprot
ID Q9M2C0
description Vacuolar iron transporter homolog 4 OS=Arabidopsis thaliana GN=At3g43660 PE=2 SV=1
trembl
ID B9SWZ1
description Nodulin, putative OS=Ricinus communis GN=RCOM_0490090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52298: 45821-45982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_080 0.0 - - Nodulin, putative [Ricinus communis]
2 Hb_000527_090 0.0487868563 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_003090_250 0.0574205105 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
4 Hb_170597_010 0.0695691773 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
5 Hb_000201_060 0.0695759935 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
6 Hb_011689_090 0.0699501337 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
7 Hb_116679_010 0.0717236904 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
8 Hb_006275_080 0.0738121621 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
9 Hb_029508_050 0.0765397323 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
10 Hb_007441_320 0.0819097576 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
11 Hb_003747_080 0.0883724214 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_007472_060 0.0888765882 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
13 Hb_003607_040 0.0889962677 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_006061_020 0.0893305058 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
15 Hb_000754_010 0.0905301011 - - unnamed protein product [Vitis vinifera]
16 Hb_137821_010 0.0911706646 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
17 Hb_103942_020 0.0997444153 - - unknown [Zea mays]
18 Hb_000358_070 0.1001228139 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
19 Hb_000203_110 0.1054407194 - - -
20 Hb_001454_030 0.1065712794 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_006452_080 Hb_006452_080 Hb_000527_090 Hb_000527_090 Hb_006452_080--Hb_000527_090 Hb_003090_250 Hb_003090_250 Hb_006452_080--Hb_003090_250 Hb_170597_010 Hb_170597_010 Hb_006452_080--Hb_170597_010 Hb_000201_060 Hb_000201_060 Hb_006452_080--Hb_000201_060 Hb_011689_090 Hb_011689_090 Hb_006452_080--Hb_011689_090 Hb_116679_010 Hb_116679_010 Hb_006452_080--Hb_116679_010 Hb_137821_010 Hb_137821_010 Hb_000527_090--Hb_137821_010 Hb_003747_080 Hb_003747_080 Hb_000527_090--Hb_003747_080 Hb_007441_320 Hb_007441_320 Hb_000527_090--Hb_007441_320 Hb_007472_060 Hb_007472_060 Hb_000527_090--Hb_007472_060 Hb_000048_120 Hb_000048_120 Hb_000527_090--Hb_000048_120 Hb_003090_250--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_003090_250--Hb_000754_010 Hb_006061_020 Hb_006061_020 Hb_003090_250--Hb_006061_020 Hb_029508_050 Hb_029508_050 Hb_003090_250--Hb_029508_050 Hb_000358_070 Hb_000358_070 Hb_003090_250--Hb_000358_070 Hb_170597_010--Hb_116679_010 Hb_006275_080 Hb_006275_080 Hb_170597_010--Hb_006275_080 Hb_170597_010--Hb_011689_090 Hb_002232_340 Hb_002232_340 Hb_170597_010--Hb_002232_340 Hb_003607_040 Hb_003607_040 Hb_170597_010--Hb_003607_040 Hb_000201_060--Hb_000754_010 Hb_000201_060--Hb_000358_070 Hb_000201_060--Hb_006061_020 Hb_000201_060--Hb_029508_050 Hb_011689_090--Hb_116679_010 Hb_011689_090--Hb_006275_080 Hb_011689_090--Hb_003607_040 Hb_000027_010 Hb_000027_010 Hb_011689_090--Hb_000027_010 Hb_116679_010--Hb_006275_080 Hb_116679_010--Hb_003607_040 Hb_116679_010--Hb_000027_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.1582 0.906816 58.5077 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.911887

CAGE analysis