Hb_000201_060

Information

Type -
Description -
Location Contig201: 90098-91160
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06150g
description POPTRDRAFT_777246; hypothetical protein
nr
ID XP_011039499.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
swissprot
ID O82318
description Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=2 SV=1
trembl
ID B9IIC8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06150g PE=4 SV=2
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at1g53430 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20420: 80293-112332 , PASA_asmbl_20421: 90608-110659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000201_060 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
2 Hb_003090_250 0.0464778588 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
3 Hb_000754_010 0.0640727071 - - unnamed protein product [Vitis vinifera]
4 Hb_000358_070 0.0667231893 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
5 Hb_006061_020 0.0673078591 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
6 Hb_029508_050 0.0686766665 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
7 Hb_006452_080 0.0695759935 - - Nodulin, putative [Ricinus communis]
8 Hb_004807_070 0.0697324368 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
9 Hb_000816_170 0.0699330854 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
10 Hb_014881_020 0.0699429352 - - Protein P21, putative [Ricinus communis]
11 Hb_001123_080 0.0714023883 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006018_020 0.0743187973 - - conserved hypothetical protein [Ricinus communis]
13 Hb_170597_010 0.0867112713 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
14 Hb_003607_040 0.0886767086 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_001232_170 0.0896347452 - - sulfate transporter, putative [Ricinus communis]
16 Hb_000012_340 0.0934480133 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
17 Hb_116679_010 0.1027082361 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
18 Hb_011344_110 0.1061504171 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
19 Hb_001343_060 0.1068760234 - - Cytochrome P450 [Theobroma cacao]
20 Hb_103942_020 0.1075625834 - - unknown [Zea mays]

Gene co-expression network

sample Hb_000201_060 Hb_000201_060 Hb_003090_250 Hb_003090_250 Hb_000201_060--Hb_003090_250 Hb_000754_010 Hb_000754_010 Hb_000201_060--Hb_000754_010 Hb_000358_070 Hb_000358_070 Hb_000201_060--Hb_000358_070 Hb_006061_020 Hb_006061_020 Hb_000201_060--Hb_006061_020 Hb_029508_050 Hb_029508_050 Hb_000201_060--Hb_029508_050 Hb_006452_080 Hb_006452_080 Hb_000201_060--Hb_006452_080 Hb_003090_250--Hb_006452_080 Hb_003090_250--Hb_000754_010 Hb_003090_250--Hb_006061_020 Hb_003090_250--Hb_029508_050 Hb_003090_250--Hb_000358_070 Hb_006018_020 Hb_006018_020 Hb_000754_010--Hb_006018_020 Hb_000754_010--Hb_006061_020 Hb_004807_070 Hb_004807_070 Hb_000754_010--Hb_004807_070 Hb_001123_080 Hb_001123_080 Hb_000754_010--Hb_001123_080 Hb_000816_170 Hb_000816_170 Hb_000358_070--Hb_000816_170 Hb_000358_070--Hb_029508_050 Hb_003607_040 Hb_003607_040 Hb_000358_070--Hb_003607_040 Hb_000358_070--Hb_006061_020 Hb_006061_020--Hb_004807_070 Hb_006061_020--Hb_006018_020 Hb_029508_050--Hb_003607_040 Hb_029508_050--Hb_006452_080 Hb_007472_060 Hb_007472_060 Hb_029508_050--Hb_007472_060 Hb_000527_090 Hb_000527_090 Hb_006452_080--Hb_000527_090 Hb_170597_010 Hb_170597_010 Hb_006452_080--Hb_170597_010 Hb_011689_090 Hb_011689_090 Hb_006452_080--Hb_011689_090 Hb_116679_010 Hb_116679_010 Hb_006452_080--Hb_116679_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.91119 1.59044 126.419 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.57224

CAGE analysis