Hb_004807_070

Information

Type -
Description -
Location Contig4807: 94258-94536
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17330g
description hypothetical protein
nr
ID XP_006384540.1
description hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
swissprot
ID Q29Q96
description Auxin-responsive protein SAUR68 OS=Arabidopsis thaliana GN=SAUR68 PE=3 SV=1
trembl
ID U5GLX6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s17330g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004807_070 0.0 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
2 Hb_001401_110 0.0536472379 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
3 Hb_001269_430 0.067893003 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
4 Hb_000201_060 0.0697324368 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
5 Hb_000754_010 0.0700200957 - - unnamed protein product [Vitis vinifera]
6 Hb_006018_020 0.0741674292 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001343_060 0.0747511355 - - Cytochrome P450 [Theobroma cacao]
8 Hb_006061_020 0.0749587907 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
9 Hb_001232_170 0.0790975824 - - sulfate transporter, putative [Ricinus communis]
10 Hb_001712_010 0.0818397756 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
11 Hb_000438_180 0.0820975395 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_001141_430 0.0833893695 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
13 Hb_014881_020 0.0835408712 - - Protein P21, putative [Ricinus communis]
14 Hb_000816_170 0.0837263226 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
15 Hb_003090_250 0.0843783965 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
16 Hb_011344_110 0.0874865519 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
17 Hb_000628_070 0.0887013189 - - -
18 Hb_001123_080 0.0902768028 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000087_160 0.090928132 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_187906_010 0.0923571754 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]

Gene co-expression network

sample Hb_004807_070 Hb_004807_070 Hb_001401_110 Hb_001401_110 Hb_004807_070--Hb_001401_110 Hb_001269_430 Hb_001269_430 Hb_004807_070--Hb_001269_430 Hb_000201_060 Hb_000201_060 Hb_004807_070--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_004807_070--Hb_000754_010 Hb_006018_020 Hb_006018_020 Hb_004807_070--Hb_006018_020 Hb_001343_060 Hb_001343_060 Hb_004807_070--Hb_001343_060 Hb_000438_180 Hb_000438_180 Hb_001401_110--Hb_000438_180 Hb_187906_010 Hb_187906_010 Hb_001401_110--Hb_187906_010 Hb_001401_110--Hb_001269_430 Hb_001712_010 Hb_001712_010 Hb_001401_110--Hb_001712_010 Hb_092272_010 Hb_092272_010 Hb_001401_110--Hb_092272_010 Hb_001269_430--Hb_001343_060 Hb_001269_430--Hb_000438_180 Hb_011930_090 Hb_011930_090 Hb_001269_430--Hb_011930_090 Hb_011344_110 Hb_011344_110 Hb_001269_430--Hb_011344_110 Hb_003090_250 Hb_003090_250 Hb_000201_060--Hb_003090_250 Hb_000201_060--Hb_000754_010 Hb_000358_070 Hb_000358_070 Hb_000201_060--Hb_000358_070 Hb_006061_020 Hb_006061_020 Hb_000201_060--Hb_006061_020 Hb_029508_050 Hb_029508_050 Hb_000201_060--Hb_029508_050 Hb_006452_080 Hb_006452_080 Hb_000201_060--Hb_006452_080 Hb_000754_010--Hb_006018_020 Hb_000754_010--Hb_006061_020 Hb_000754_010--Hb_003090_250 Hb_001123_080 Hb_001123_080 Hb_000754_010--Hb_001123_080 Hb_006018_020--Hb_001123_080 Hb_001232_170 Hb_001232_170 Hb_006018_020--Hb_001232_170 Hb_014881_020 Hb_014881_020 Hb_006018_020--Hb_014881_020 Hb_000628_070 Hb_000628_070 Hb_006018_020--Hb_000628_070 Hb_006018_020--Hb_011344_110 Hb_001141_430 Hb_001141_430 Hb_001343_060--Hb_001141_430 Hb_159791_010 Hb_159791_010 Hb_001343_060--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_001343_060--Hb_004757_010 Hb_001343_060--Hb_011344_110 Hb_000816_170 Hb_000816_170 Hb_001343_060--Hb_000816_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.1484 0.370996 13.7125 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.0556

CAGE analysis