Hb_004757_010

Information

Type -
Description -
Location Contig4757: 6863-7579
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11360g
description POPTRDRAFT_825947; hypothetical protein
nr
ID XP_011018053.1
description PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9IMB8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11360g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004757_010 0.0 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
2 Hb_159791_010 0.0598248685 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
3 Hb_001343_060 0.0602071161 - - Cytochrome P450 [Theobroma cacao]
4 Hb_001141_430 0.0612768683 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
5 Hb_011344_050 0.0679623817 - - PREDICTED: 21 kDa protein [Jatropha curcas]
6 Hb_027411_030 0.0714654775 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_001712_010 0.0782099551 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
8 Hb_000959_170 0.0799282748 - - Cell division protein kinase 7, putative [Ricinus communis]
9 Hb_006618_100 0.0808872249 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
10 Hb_001579_160 0.0811492687 - - PREDICTED: kininogen-1-like [Jatropha curcas]
11 Hb_145975_010 0.0819144621 - - cytochrome P450, putative [Ricinus communis]
12 Hb_001269_430 0.0915496866 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
13 Hb_013399_060 0.0944043925 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
14 Hb_012217_010 0.0967373837 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
15 Hb_000991_060 0.0974476954 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
16 Hb_004158_040 0.0983809976 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
17 Hb_000087_160 0.0989350602 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000243_240 0.1002607953 - - cytochrome P450 family protein [Populus trichocarpa]
19 Hb_001401_110 0.1011731941 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
20 Hb_001541_170 0.1013019739 - - hypothetical protein JCGZ_17850 [Jatropha curcas]

Gene co-expression network

sample Hb_004757_010 Hb_004757_010 Hb_159791_010 Hb_159791_010 Hb_004757_010--Hb_159791_010 Hb_001343_060 Hb_001343_060 Hb_004757_010--Hb_001343_060 Hb_001141_430 Hb_001141_430 Hb_004757_010--Hb_001141_430 Hb_011344_050 Hb_011344_050 Hb_004757_010--Hb_011344_050 Hb_027411_030 Hb_027411_030 Hb_004757_010--Hb_027411_030 Hb_001712_010 Hb_001712_010 Hb_004757_010--Hb_001712_010 Hb_159791_010--Hb_001141_430 Hb_159791_010--Hb_001343_060 Hb_000959_170 Hb_000959_170 Hb_159791_010--Hb_000959_170 Hb_000816_170 Hb_000816_170 Hb_159791_010--Hb_000816_170 Hb_000087_160 Hb_000087_160 Hb_159791_010--Hb_000087_160 Hb_001343_060--Hb_001141_430 Hb_011344_110 Hb_011344_110 Hb_001343_060--Hb_011344_110 Hb_001269_430 Hb_001269_430 Hb_001343_060--Hb_001269_430 Hb_001343_060--Hb_000816_170 Hb_001141_430--Hb_011344_110 Hb_001141_430--Hb_000816_170 Hb_001141_430--Hb_001712_010 Hb_011344_050--Hb_027411_030 Hb_010863_020 Hb_010863_020 Hb_011344_050--Hb_010863_020 Hb_006618_100 Hb_006618_100 Hb_011344_050--Hb_006618_100 Hb_013399_060 Hb_013399_060 Hb_011344_050--Hb_013399_060 Hb_001296_010 Hb_001296_010 Hb_011344_050--Hb_001296_010 Hb_001579_160 Hb_001579_160 Hb_027411_030--Hb_001579_160 Hb_000991_060 Hb_000991_060 Hb_027411_030--Hb_000991_060 Hb_027411_030--Hb_001141_430 Hb_145975_010 Hb_145975_010 Hb_027411_030--Hb_145975_010 Hb_092272_010 Hb_092272_010 Hb_001712_010--Hb_092272_010 Hb_000628_070 Hb_000628_070 Hb_001712_010--Hb_000628_070 Hb_001712_010--Hb_001343_060 Hb_001712_010--Hb_011344_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.49933 2.93248 66.8223 0.179182 0.0532141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.36222 6.89747

CAGE analysis