Hb_013399_060

Information

Type -
Description -
Location Contig13399: 38603-39919
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06210g
description POPTRDRAFT_817062; hypothetical protein
nr
ID XP_011035694.1
description PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GWB8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06210g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09568: 39353-39990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013399_060 0.0 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
2 Hb_010863_020 0.0665497117 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
3 Hb_003858_070 0.0688629028 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
4 Hb_001006_300 0.0724905163 - - lipid binding protein, putative [Ricinus communis]
5 Hb_003598_050 0.0837621559 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_180088_010 0.0867978354 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_001296_010 0.0892049667 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011344_050 0.090729823 - - PREDICTED: 21 kDa protein [Jatropha curcas]
9 Hb_009421_060 0.0922312311 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
10 Hb_017061_010 0.0929154054 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
11 Hb_006351_050 0.0931769086 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
12 Hb_001500_020 0.0939011171 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_004757_010 0.0944043925 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
14 Hb_000991_060 0.0964493428 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
15 Hb_000521_060 0.0977420875 - - PREDICTED: protein YLS3-like [Jatropha curcas]
16 Hb_135757_030 0.0981330343 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
17 Hb_027411_030 0.1003406222 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_001579_160 0.10333074 - - PREDICTED: kininogen-1-like [Jatropha curcas]
19 Hb_000959_170 0.1060250847 - - Cell division protein kinase 7, putative [Ricinus communis]
20 Hb_000497_080 0.1061798083 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_013399_060 Hb_013399_060 Hb_010863_020 Hb_010863_020 Hb_013399_060--Hb_010863_020 Hb_003858_070 Hb_003858_070 Hb_013399_060--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_013399_060--Hb_001006_300 Hb_003598_050 Hb_003598_050 Hb_013399_060--Hb_003598_050 Hb_180088_010 Hb_180088_010 Hb_013399_060--Hb_180088_010 Hb_001296_010 Hb_001296_010 Hb_013399_060--Hb_001296_010 Hb_001257_140 Hb_001257_140 Hb_010863_020--Hb_001257_140 Hb_010863_020--Hb_003858_070 Hb_010863_020--Hb_001296_010 Hb_011344_050 Hb_011344_050 Hb_010863_020--Hb_011344_050 Hb_010863_020--Hb_001006_300 Hb_003858_070--Hb_001006_300 Hb_017061_010 Hb_017061_010 Hb_003858_070--Hb_017061_010 Hb_005144_150 Hb_005144_150 Hb_003858_070--Hb_005144_150 Hb_003858_070--Hb_180088_010 Hb_001006_300--Hb_017061_010 Hb_001898_030 Hb_001898_030 Hb_001006_300--Hb_001898_030 Hb_000964_120 Hb_000964_120 Hb_001006_300--Hb_000964_120 Hb_001006_300--Hb_005144_150 Hb_112950_010 Hb_112950_010 Hb_003598_050--Hb_112950_010 Hb_001500_020 Hb_001500_020 Hb_003598_050--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_003598_050--Hb_006351_050 Hb_000497_080 Hb_000497_080 Hb_003598_050--Hb_000497_080 Hb_002686_220 Hb_002686_220 Hb_003598_050--Hb_002686_220 Hb_003598_050--Hb_180088_010 Hb_180088_010--Hb_006351_050 Hb_180088_010--Hb_001500_020 Hb_007919_010 Hb_007919_010 Hb_180088_010--Hb_007919_010 Hb_180088_010--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_180088_010--Hb_009421_060 Hb_001296_010--Hb_011344_050 Hb_000991_060 Hb_000991_060 Hb_001296_010--Hb_000991_060 Hb_002030_190 Hb_002030_190 Hb_001296_010--Hb_002030_190 Hb_027411_030 Hb_027411_030 Hb_001296_010--Hb_027411_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0198299 0.933457 1.35933 14.8063 0.0607167 0.0303403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0285811 0 0.445798 1.66433

CAGE analysis