Hb_002030_190

Information

Type -
Description -
Location Contig2030: 230508-231140
Sequence    

Annotation

kegg
ID rcu:RCOM_0338110
description hypothetical protein
nr
ID XP_002534100.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T781
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0338110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000206_270 0.1019525629 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
3 Hb_011344_050 0.1042769358 - - PREDICTED: 21 kDa protein [Jatropha curcas]
4 Hb_001296_010 0.1057000609 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000152_630 0.1057809665 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
6 Hb_000920_120 0.1102874085 - - -
7 Hb_013399_060 0.1104661283 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
8 Hb_000188_140 0.1130758474 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
9 Hb_000087_160 0.1132703432 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_012217_010 0.1164937917 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
11 Hb_000186_090 0.1181384391 - - ACC oxidase 1 [Hevea brasiliensis]
12 Hb_159791_010 0.1181749781 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
13 Hb_000959_170 0.1214960115 - - Cell division protein kinase 7, putative [Ricinus communis]
14 Hb_000710_130 0.1224867394 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_069384_010 0.1225575188 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
16 Hb_011930_090 0.1237137571 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
17 Hb_001300_030 0.1243429898 - - hypothetical protein JCGZ_13871 [Jatropha curcas]
18 Hb_004757_010 0.1253199927 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
19 Hb_010863_020 0.1265022245 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
20 Hb_003464_100 0.127068216 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]

Gene co-expression network

sample Hb_002030_190 Hb_002030_190 Hb_000206_270 Hb_000206_270 Hb_002030_190--Hb_000206_270 Hb_011344_050 Hb_011344_050 Hb_002030_190--Hb_011344_050 Hb_001296_010 Hb_001296_010 Hb_002030_190--Hb_001296_010 Hb_000152_630 Hb_000152_630 Hb_002030_190--Hb_000152_630 Hb_000920_120 Hb_000920_120 Hb_002030_190--Hb_000920_120 Hb_013399_060 Hb_013399_060 Hb_002030_190--Hb_013399_060 Hb_012217_010 Hb_012217_010 Hb_000206_270--Hb_012217_010 Hb_000206_270--Hb_013399_060 Hb_001418_050 Hb_001418_050 Hb_000206_270--Hb_001418_050 Hb_000206_270--Hb_011344_050 Hb_000098_230 Hb_000098_230 Hb_000206_270--Hb_000098_230 Hb_004757_010 Hb_004757_010 Hb_011344_050--Hb_004757_010 Hb_027411_030 Hb_027411_030 Hb_011344_050--Hb_027411_030 Hb_010863_020 Hb_010863_020 Hb_011344_050--Hb_010863_020 Hb_006618_100 Hb_006618_100 Hb_011344_050--Hb_006618_100 Hb_011344_050--Hb_013399_060 Hb_011344_050--Hb_001296_010 Hb_001296_010--Hb_010863_020 Hb_001296_010--Hb_013399_060 Hb_000991_060 Hb_000991_060 Hb_001296_010--Hb_000991_060 Hb_001296_010--Hb_027411_030 Hb_000188_140 Hb_000188_140 Hb_000152_630--Hb_000188_140 Hb_000230_220 Hb_000230_220 Hb_000152_630--Hb_000230_220 Hb_069384_010 Hb_069384_010 Hb_000152_630--Hb_069384_010 Hb_004102_180 Hb_004102_180 Hb_000152_630--Hb_004102_180 Hb_000087_160 Hb_000087_160 Hb_000152_630--Hb_000087_160 Hb_116349_080 Hb_116349_080 Hb_000152_630--Hb_116349_080 Hb_000920_120--Hb_000087_160 Hb_000920_120--Hb_012217_010 Hb_007441_100 Hb_007441_100 Hb_000920_120--Hb_007441_100 Hb_001500_020 Hb_001500_020 Hb_000920_120--Hb_001500_020 Hb_000920_120--Hb_000188_140 Hb_013399_060--Hb_010863_020 Hb_003858_070 Hb_003858_070 Hb_013399_060--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_013399_060--Hb_001006_300 Hb_003598_050 Hb_003598_050 Hb_013399_060--Hb_003598_050 Hb_180088_010 Hb_180088_010 Hb_013399_060--Hb_180088_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.040282 1.16863 1.1435 13.4657 0.156692 0.171089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0933365 0 0 0.299948 0.858857

CAGE analysis