Hb_004102_180

Information

Type -
Description -
Location Contig4102: 116553-117967
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05990g
description POPTRDRAFT_712480; hypothetical protein
nr
ID XP_002304153.1
description zinc finger family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GWD5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s05990g PE=4 SV=1
Gene Ontology
ID GO:0008270
description ran bp2 nzf zinc finger-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40548: 116849-118271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_180 0.0 - - zinc finger family protein [Populus trichocarpa]
2 Hb_069384_010 0.049333305 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
3 Hb_000175_600 0.0523474568 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
4 Hb_011218_010 0.0567597865 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
5 Hb_007292_060 0.0707483481 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
6 Hb_007290_010 0.0732668125 - - cytochrome P450, putative [Ricinus communis]
7 Hb_002326_090 0.0739565276 - - amino acid transporter, putative [Ricinus communis]
8 Hb_000152_630 0.087997521 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
9 Hb_000964_120 0.0882662109 - - DNA-damage-inducible protein f, putative [Ricinus communis]
10 Hb_136944_010 0.0906074665 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
11 Hb_007292_020 0.0926213763 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
12 Hb_006603_010 0.0936788585 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
13 Hb_003197_050 0.094081342 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
14 Hb_010608_040 0.0998393416 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
15 Hb_002925_040 0.1000363782 desease resistance Gene Name: TIR hypothetical protein JCGZ_01545 [Jatropha curcas]
16 Hb_000230_220 0.1000542911 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000188_140 0.1012512479 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
18 Hb_003464_100 0.101552374 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
19 Hb_000186_090 0.1020989994 - - ACC oxidase 1 [Hevea brasiliensis]
20 Hb_116349_080 0.103067475 - - Nectarin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004102_180 Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_004102_180--Hb_069384_010 Hb_000175_600 Hb_000175_600 Hb_004102_180--Hb_000175_600 Hb_011218_010 Hb_011218_010 Hb_004102_180--Hb_011218_010 Hb_007292_060 Hb_007292_060 Hb_004102_180--Hb_007292_060 Hb_007290_010 Hb_007290_010 Hb_004102_180--Hb_007290_010 Hb_002326_090 Hb_002326_090 Hb_004102_180--Hb_002326_090 Hb_069384_010--Hb_011218_010 Hb_000186_090 Hb_000186_090 Hb_069384_010--Hb_000186_090 Hb_069384_010--Hb_007290_010 Hb_007292_020 Hb_007292_020 Hb_069384_010--Hb_007292_020 Hb_000152_630 Hb_000152_630 Hb_069384_010--Hb_000152_630 Hb_000175_600--Hb_002326_090 Hb_000175_600--Hb_007292_060 Hb_136944_010 Hb_136944_010 Hb_000175_600--Hb_136944_010 Hb_000175_600--Hb_011218_010 Hb_000964_120 Hb_000964_120 Hb_000175_600--Hb_000964_120 Hb_011218_010--Hb_007292_060 Hb_011218_010--Hb_000964_120 Hb_011218_010--Hb_002326_090 Hb_007292_060--Hb_000964_120 Hb_007292_060--Hb_002326_090 Hb_090210_010 Hb_090210_010 Hb_007292_060--Hb_090210_010 Hb_003561_020 Hb_003561_020 Hb_007290_010--Hb_003561_020 Hb_004137_090 Hb_004137_090 Hb_007290_010--Hb_004137_090 Hb_010608_040 Hb_010608_040 Hb_007290_010--Hb_010608_040 Hb_007290_010--Hb_011218_010 Hb_002326_090--Hb_000964_120 Hb_002326_090--Hb_090210_010 Hb_001898_030 Hb_001898_030 Hb_002326_090--Hb_001898_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.052181 5.66311 16.3953 121.759 0.452101 0.543546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.791555 3.98621

CAGE analysis