Hb_002326_090

Information

Type -
Description -
Location Contig2326: 86181-90821
Sequence    

Annotation

kegg
ID rcu:RCOM_1592440
description amino acid transporter, putative
nr
ID XP_002510286.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9SX98
description Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1
trembl
ID B9R7J3
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_1592440 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lysine histidine transporter-like 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_090 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_007292_060 0.0586306958 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
3 Hb_000175_600 0.0600365091 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
4 Hb_000964_120 0.0701513213 - - DNA-damage-inducible protein f, putative [Ricinus communis]
5 Hb_090210_010 0.0717043747 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
6 Hb_004102_180 0.0739565276 - - zinc finger family protein [Populus trichocarpa]
7 Hb_001898_030 0.0809271371 - - protein kinase-coding resistance protein [Nicotiana repanda]
8 Hb_010608_040 0.0851871976 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
9 Hb_011218_010 0.0858476462 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
10 Hb_069384_010 0.0876160519 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
11 Hb_003197_050 0.0977255912 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
12 Hb_007290_010 0.0990182805 - - cytochrome P450, putative [Ricinus communis]
13 Hb_007292_020 0.1002678319 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
14 Hb_000796_110 0.1017336311 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
15 Hb_017061_010 0.1051098889 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
16 Hb_001006_300 0.1083670565 - - lipid binding protein, putative [Ricinus communis]
17 Hb_136944_010 0.1087321926 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
18 Hb_003464_100 0.1094397301 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
19 Hb_002304_110 0.1104021407 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
20 Hb_006603_010 0.111057775 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002326_090 Hb_002326_090 Hb_007292_060 Hb_007292_060 Hb_002326_090--Hb_007292_060 Hb_000175_600 Hb_000175_600 Hb_002326_090--Hb_000175_600 Hb_000964_120 Hb_000964_120 Hb_002326_090--Hb_000964_120 Hb_090210_010 Hb_090210_010 Hb_002326_090--Hb_090210_010 Hb_004102_180 Hb_004102_180 Hb_002326_090--Hb_004102_180 Hb_001898_030 Hb_001898_030 Hb_002326_090--Hb_001898_030 Hb_007292_060--Hb_000964_120 Hb_007292_060--Hb_090210_010 Hb_007292_060--Hb_000175_600 Hb_007292_060--Hb_004102_180 Hb_011218_010 Hb_011218_010 Hb_007292_060--Hb_011218_010 Hb_000175_600--Hb_004102_180 Hb_136944_010 Hb_136944_010 Hb_000175_600--Hb_136944_010 Hb_000175_600--Hb_011218_010 Hb_000175_600--Hb_000964_120 Hb_001006_300 Hb_001006_300 Hb_000964_120--Hb_001006_300 Hb_003197_050 Hb_003197_050 Hb_000964_120--Hb_003197_050 Hb_000964_120--Hb_011218_010 Hb_000964_120--Hb_090210_010 Hb_153258_030 Hb_153258_030 Hb_090210_010--Hb_153258_030 Hb_000731_180 Hb_000731_180 Hb_090210_010--Hb_000731_180 Hb_000796_110 Hb_000796_110 Hb_090210_010--Hb_000796_110 Hb_002999_020 Hb_002999_020 Hb_090210_010--Hb_002999_020 Hb_069384_010 Hb_069384_010 Hb_004102_180--Hb_069384_010 Hb_004102_180--Hb_011218_010 Hb_007290_010 Hb_007290_010 Hb_004102_180--Hb_007290_010 Hb_002304_110 Hb_002304_110 Hb_001898_030--Hb_002304_110 Hb_017061_010 Hb_017061_010 Hb_001898_030--Hb_017061_010 Hb_001898_030--Hb_001006_300 Hb_001898_030--Hb_090210_010 Hb_001898_030--Hb_007292_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0380122 0.590239 3.5403 21.7817 0 0.0201701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.287788 0.782276

CAGE analysis