Hb_000731_180

Information

Type -
Description -
Location Contig731: 180078-180419
Sequence    

Annotation

kegg
ID pop:POPTR_0004s01820g
description POPTRDRAFT_555351; hypothetical protein
nr
ID XP_002305590.2
description hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H1E3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s01820g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000731_180 0.0 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
2 Hb_004732_080 0.0317949351 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
3 Hb_090210_010 0.0597488238 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
4 Hb_011224_030 0.0660982976 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
5 Hb_007007_140 0.0674176433 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
6 Hb_024066_020 0.0683031838 - - P66 protein [Hevea brasiliensis]
7 Hb_002308_040 0.0702038227 - - methyladenine glycosylase family protein [Populus trichocarpa]
8 Hb_153258_030 0.0725258445 - - hypothetical protein RCOM_0853150 [Ricinus communis]
9 Hb_004396_020 0.0744786185 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
10 Hb_002471_310 0.0776711122 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
11 Hb_001416_120 0.0790208181 - - caspase, putative [Ricinus communis]
12 Hb_001496_150 0.0811366742 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
13 Hb_004693_040 0.0819804411 - - -
14 Hb_014834_100 0.083555217 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
15 Hb_009158_010 0.0870370214 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
16 Hb_001557_030 0.0887366832 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
17 Hb_003152_010 0.0890290636 - - -
18 Hb_007292_060 0.0893814763 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
19 Hb_000796_110 0.0896308025 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
20 Hb_002073_210 0.0900191609 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000731_180 Hb_000731_180 Hb_004732_080 Hb_004732_080 Hb_000731_180--Hb_004732_080 Hb_090210_010 Hb_090210_010 Hb_000731_180--Hb_090210_010 Hb_011224_030 Hb_011224_030 Hb_000731_180--Hb_011224_030 Hb_007007_140 Hb_007007_140 Hb_000731_180--Hb_007007_140 Hb_024066_020 Hb_024066_020 Hb_000731_180--Hb_024066_020 Hb_002308_040 Hb_002308_040 Hb_000731_180--Hb_002308_040 Hb_004732_080--Hb_007007_140 Hb_004396_020 Hb_004396_020 Hb_004732_080--Hb_004396_020 Hb_004732_080--Hb_024066_020 Hb_004732_080--Hb_011224_030 Hb_004732_080--Hb_002308_040 Hb_153258_030 Hb_153258_030 Hb_090210_010--Hb_153258_030 Hb_000796_110 Hb_000796_110 Hb_090210_010--Hb_000796_110 Hb_007292_060 Hb_007292_060 Hb_090210_010--Hb_007292_060 Hb_002326_090 Hb_002326_090 Hb_090210_010--Hb_002326_090 Hb_002999_020 Hb_002999_020 Hb_090210_010--Hb_002999_020 Hb_150179_010 Hb_150179_010 Hb_011224_030--Hb_150179_010 Hb_000664_010 Hb_000664_010 Hb_011224_030--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_011224_030--Hb_029584_030 Hb_002471_310 Hb_002471_310 Hb_011224_030--Hb_002471_310 Hb_011224_030--Hb_002308_040 Hb_011224_030--Hb_007007_140 Hb_007007_140--Hb_024066_020 Hb_007007_140--Hb_004396_020 Hb_007007_140--Hb_002308_040 Hb_007007_140--Hb_150179_010 Hb_007007_140--Hb_002471_310 Hb_024066_020--Hb_004396_020 Hb_024066_020--Hb_002308_040 Hb_004693_040 Hb_004693_040 Hb_024066_020--Hb_004693_040 Hb_024066_020--Hb_002471_310 Hb_002308_040--Hb_002471_310 Hb_002308_040--Hb_004693_040 Hb_005665_100 Hb_005665_100 Hb_002308_040--Hb_005665_100 Hb_002308_040--Hb_000664_010 Hb_018910_010 Hb_018910_010 Hb_002308_040--Hb_018910_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.356812 6.24918 41.2397 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0966184 3.57048

CAGE analysis