Hb_153258_030

Information

Type -
Description -
Location Contig153258: 14381-14875
Sequence    

Annotation

kegg
ID rcu:RCOM_0853150
description hypothetical protein
nr
ID XP_002517427.1
description hypothetical protein RCOM_0853150 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUI2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0853150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13178: 14449-15006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153258_030 0.0 - - hypothetical protein RCOM_0853150 [Ricinus communis]
2 Hb_002999_020 0.0381066838 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
3 Hb_000796_110 0.0504402433 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
4 Hb_090210_010 0.055379854 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
5 Hb_001496_150 0.0620430823 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
6 Hb_001416_120 0.0622596985 - - caspase, putative [Ricinus communis]
7 Hb_000742_040 0.0715642698 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
8 Hb_000731_180 0.0725258445 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
9 Hb_016734_110 0.0752426708 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
10 Hb_004693_040 0.0808072772 - - -
11 Hb_000802_040 0.0859307289 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
12 Hb_009662_040 0.0872151817 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
13 Hb_018910_010 0.0882790214 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
14 Hb_002308_040 0.0896911956 - - methyladenine glycosylase family protein [Populus trichocarpa]
15 Hb_124677_070 0.0906337292 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
16 Hb_004732_080 0.0916887908 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
17 Hb_010327_040 0.0959587106 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
18 Hb_002471_310 0.0988192142 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
19 Hb_002263_050 0.0993509049 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
20 Hb_001568_040 0.1013456882 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_153258_030 Hb_153258_030 Hb_002999_020 Hb_002999_020 Hb_153258_030--Hb_002999_020 Hb_000796_110 Hb_000796_110 Hb_153258_030--Hb_000796_110 Hb_090210_010 Hb_090210_010 Hb_153258_030--Hb_090210_010 Hb_001496_150 Hb_001496_150 Hb_153258_030--Hb_001496_150 Hb_001416_120 Hb_001416_120 Hb_153258_030--Hb_001416_120 Hb_000742_040 Hb_000742_040 Hb_153258_030--Hb_000742_040 Hb_002999_020--Hb_000742_040 Hb_002999_020--Hb_000796_110 Hb_002999_020--Hb_001416_120 Hb_124677_070 Hb_124677_070 Hb_002999_020--Hb_124677_070 Hb_016734_110 Hb_016734_110 Hb_002999_020--Hb_016734_110 Hb_000796_110--Hb_001416_120 Hb_000796_110--Hb_000742_040 Hb_000796_110--Hb_090210_010 Hb_000934_120 Hb_000934_120 Hb_000796_110--Hb_000934_120 Hb_000731_180 Hb_000731_180 Hb_090210_010--Hb_000731_180 Hb_007292_060 Hb_007292_060 Hb_090210_010--Hb_007292_060 Hb_002326_090 Hb_002326_090 Hb_090210_010--Hb_002326_090 Hb_090210_010--Hb_002999_020 Hb_000227_290 Hb_000227_290 Hb_001496_150--Hb_000227_290 Hb_018910_010 Hb_018910_010 Hb_001496_150--Hb_018910_010 Hb_000049_190 Hb_000049_190 Hb_001496_150--Hb_000049_190 Hb_005665_100 Hb_005665_100 Hb_001496_150--Hb_005665_100 Hb_001568_040 Hb_001568_040 Hb_001496_150--Hb_001568_040 Hb_000802_040 Hb_000802_040 Hb_001416_120--Hb_000802_040 Hb_001416_120--Hb_000742_040 Hb_001416_120--Hb_124677_070 Hb_000742_040--Hb_124677_070 Hb_000742_040--Hb_016734_110 Hb_000742_040--Hb_000802_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0604507 1.6966 7.07694 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0446061 0.599849

CAGE analysis