Hb_001496_150

Information

Type -
Description -
Location Contig1496: 119061-119354
Sequence    

Annotation

kegg
ID rcu:RCOM_0759460
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012066670.1
description PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
swissprot
ID O49545
description Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1
trembl
ID A0A067L5D3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00240 PE=4 SV=1
Gene Ontology
ID GO:0005622
description leucine-rich repeat receptor-like serine threonine-protein kinase bam3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001496_150 0.0 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
2 Hb_153258_030 0.0620430823 - - hypothetical protein RCOM_0853150 [Ricinus communis]
3 Hb_000227_290 0.0650784016 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
4 Hb_018910_010 0.0686002441 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
5 Hb_000049_190 0.0696719353 - - nucleotide binding protein, putative [Ricinus communis]
6 Hb_005665_100 0.0741758991 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
7 Hb_001568_040 0.0757581706 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002308_040 0.0774688459 - - methyladenine glycosylase family protein [Populus trichocarpa]
9 Hb_002309_020 0.0787873711 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
10 Hb_016734_110 0.0789967205 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
11 Hb_004693_040 0.0792572866 - - -
12 Hb_000731_180 0.0811366742 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
13 Hb_002471_310 0.0814053072 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
14 Hb_001357_110 0.0817736732 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
15 Hb_002999_020 0.0875946176 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
16 Hb_005614_060 0.0882482958 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
17 Hb_000005_290 0.0892474909 - - Serine carboxypeptidase, putative [Ricinus communis]
18 Hb_001416_120 0.0900815996 - - caspase, putative [Ricinus communis]
19 Hb_000796_110 0.0925045885 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
20 Hb_000664_010 0.0928277603 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001496_150 Hb_001496_150 Hb_153258_030 Hb_153258_030 Hb_001496_150--Hb_153258_030 Hb_000227_290 Hb_000227_290 Hb_001496_150--Hb_000227_290 Hb_018910_010 Hb_018910_010 Hb_001496_150--Hb_018910_010 Hb_000049_190 Hb_000049_190 Hb_001496_150--Hb_000049_190 Hb_005665_100 Hb_005665_100 Hb_001496_150--Hb_005665_100 Hb_001568_040 Hb_001568_040 Hb_001496_150--Hb_001568_040 Hb_002999_020 Hb_002999_020 Hb_153258_030--Hb_002999_020 Hb_000796_110 Hb_000796_110 Hb_153258_030--Hb_000796_110 Hb_090210_010 Hb_090210_010 Hb_153258_030--Hb_090210_010 Hb_001416_120 Hb_001416_120 Hb_153258_030--Hb_001416_120 Hb_000742_040 Hb_000742_040 Hb_153258_030--Hb_000742_040 Hb_001357_110 Hb_001357_110 Hb_000227_290--Hb_001357_110 Hb_000664_010 Hb_000664_010 Hb_000227_290--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_000227_290--Hb_029584_030 Hb_000227_290--Hb_005665_100 Hb_005614_060 Hb_005614_060 Hb_000227_290--Hb_005614_060 Hb_018910_010--Hb_000049_190 Hb_004693_040 Hb_004693_040 Hb_018910_010--Hb_004693_040 Hb_018910_010--Hb_001568_040 Hb_018910_010--Hb_005665_100 Hb_002308_040 Hb_002308_040 Hb_018910_010--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_018910_010--Hb_002471_310 Hb_000049_190--Hb_001568_040 Hb_000049_190--Hb_005665_100 Hb_000049_190--Hb_005614_060 Hb_000049_190--Hb_004693_040 Hb_000049_190--Hb_002308_040 Hb_005665_100--Hb_000664_010 Hb_005665_100--Hb_005614_060 Hb_005665_100--Hb_002471_310 Hb_005665_100--Hb_002308_040 Hb_001568_040--Hb_005665_100 Hb_000020_170 Hb_000020_170 Hb_001568_040--Hb_000020_170 Hb_001568_040--Hb_004693_040 Hb_001568_040--Hb_005614_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.541446 12.7552 54.1146 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.144455 7.58155

CAGE analysis