Hb_001416_120

Information

Type -
Description -
Location Contig1416: 187282-189638
Sequence    

Annotation

kegg
ID rcu:RCOM_0853900
description caspase, putative
nr
ID XP_002517452.1
description caspase, putative [Ricinus communis]
swissprot
ID Q9FYE1
description Metacaspase-9 OS=Arabidopsis thaliana GN=AMC9 PE=1 SV=1
trembl
ID B9RUK7
description Caspase, putative OS=Ricinus communis GN=RCOM_0853900 PE=4 SV=1
Gene Ontology
ID GO:0004197
description latex-abundant family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11187: 187160-189703
cDNA
(Sanger)
(ID:Location)		 040_L21.ab1: 187516-189703

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001416_120 0.0 - - caspase, putative [Ricinus communis]
2 Hb_000796_110 0.053232354 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
3 Hb_153258_030 0.0622596985 - - hypothetical protein RCOM_0853150 [Ricinus communis]
4 Hb_002999_020 0.0649821868 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
5 Hb_000802_040 0.0696520802 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
6 Hb_000742_040 0.0738775083 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
7 Hb_124677_070 0.0765908022 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
8 Hb_010327_040 0.0785480573 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
9 Hb_000731_180 0.0790208181 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
10 Hb_090210_010 0.0799638889 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
11 Hb_004693_040 0.0810106937 - - -
12 Hb_016734_110 0.0818326154 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
13 Hb_004732_080 0.0897229088 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
14 Hb_001496_150 0.0900815996 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
15 Hb_024066_020 0.0944605499 - - P66 protein [Hevea brasiliensis]
16 Hb_018910_010 0.0961208004 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
17 Hb_000934_120 0.0981055124 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
18 Hb_007007_140 0.1011438521 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
19 Hb_010608_040 0.1012992385 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
20 Hb_002308_040 0.1015908771 - - methyladenine glycosylase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001416_120 Hb_001416_120 Hb_000796_110 Hb_000796_110 Hb_001416_120--Hb_000796_110 Hb_153258_030 Hb_153258_030 Hb_001416_120--Hb_153258_030 Hb_002999_020 Hb_002999_020 Hb_001416_120--Hb_002999_020 Hb_000802_040 Hb_000802_040 Hb_001416_120--Hb_000802_040 Hb_000742_040 Hb_000742_040 Hb_001416_120--Hb_000742_040 Hb_124677_070 Hb_124677_070 Hb_001416_120--Hb_124677_070 Hb_000796_110--Hb_153258_030 Hb_000796_110--Hb_002999_020 Hb_000796_110--Hb_000742_040 Hb_090210_010 Hb_090210_010 Hb_000796_110--Hb_090210_010 Hb_000934_120 Hb_000934_120 Hb_000796_110--Hb_000934_120 Hb_153258_030--Hb_002999_020 Hb_153258_030--Hb_090210_010 Hb_001496_150 Hb_001496_150 Hb_153258_030--Hb_001496_150 Hb_153258_030--Hb_000742_040 Hb_002999_020--Hb_000742_040 Hb_002999_020--Hb_124677_070 Hb_016734_110 Hb_016734_110 Hb_002999_020--Hb_016734_110 Hb_010327_040 Hb_010327_040 Hb_000802_040--Hb_010327_040 Hb_000802_040--Hb_124677_070 Hb_026196_020 Hb_026196_020 Hb_000802_040--Hb_026196_020 Hb_000802_040--Hb_002999_020 Hb_004693_040 Hb_004693_040 Hb_000802_040--Hb_004693_040 Hb_000742_040--Hb_124677_070 Hb_000742_040--Hb_016734_110 Hb_000742_040--Hb_000802_040 Hb_124677_070--Hb_026196_020 Hb_188742_010 Hb_188742_010 Hb_124677_070--Hb_188742_010 Hb_124677_070--Hb_010327_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.152047 3.57802 15.9286 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0409786 0 0 1.08805

CAGE analysis