Hb_010327_040

Information

Type -
Description -
Location Contig10327: 36858-37142
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17300g
description POPTRDRAFT_648723; hypothetical protein
nr
ID XP_002306157.1
description hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
swissprot
ID P33081
description Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
trembl
ID B9H127
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010327_040 0.0 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
2 Hb_000802_040 0.0413417211 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
3 Hb_004396_020 0.052648443 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
4 Hb_024066_020 0.0593423263 - - P66 protein [Hevea brasiliensis]
5 Hb_007007_140 0.0658022553 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
6 Hb_004693_040 0.0692739894 - - -
7 Hb_000392_080 0.0703815381 - - hypothetical protein glysoja_034865 [Glycine soja]
8 Hb_026196_020 0.0759394396 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_124677_070 0.0765759882 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
10 Hb_004732_080 0.077447401 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
11 Hb_001416_120 0.0785480573 - - caspase, putative [Ricinus communis]
12 Hb_002308_040 0.0891719879 - - methyladenine glycosylase family protein [Populus trichocarpa]
13 Hb_000731_180 0.0910257651 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
14 Hb_002999_020 0.0919378619 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
15 Hb_153258_030 0.0959587106 - - hypothetical protein RCOM_0853150 [Ricinus communis]
16 Hb_000742_040 0.0972629711 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
17 Hb_000352_210 0.0981719832 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
18 Hb_002471_310 0.0986998353 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
19 Hb_018910_010 0.0993427556 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
20 Hb_000796_110 0.1001211181 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]

Gene co-expression network

sample Hb_010327_040 Hb_010327_040 Hb_000802_040 Hb_000802_040 Hb_010327_040--Hb_000802_040 Hb_004396_020 Hb_004396_020 Hb_010327_040--Hb_004396_020 Hb_024066_020 Hb_024066_020 Hb_010327_040--Hb_024066_020 Hb_007007_140 Hb_007007_140 Hb_010327_040--Hb_007007_140 Hb_004693_040 Hb_004693_040 Hb_010327_040--Hb_004693_040 Hb_000392_080 Hb_000392_080 Hb_010327_040--Hb_000392_080 Hb_124677_070 Hb_124677_070 Hb_000802_040--Hb_124677_070 Hb_026196_020 Hb_026196_020 Hb_000802_040--Hb_026196_020 Hb_001416_120 Hb_001416_120 Hb_000802_040--Hb_001416_120 Hb_002999_020 Hb_002999_020 Hb_000802_040--Hb_002999_020 Hb_000802_040--Hb_004693_040 Hb_004396_020--Hb_007007_140 Hb_004396_020--Hb_024066_020 Hb_004732_080 Hb_004732_080 Hb_004396_020--Hb_004732_080 Hb_004396_020--Hb_000392_080 Hb_000331_380 Hb_000331_380 Hb_004396_020--Hb_000331_380 Hb_024066_020--Hb_007007_140 Hb_024066_020--Hb_004732_080 Hb_002308_040 Hb_002308_040 Hb_024066_020--Hb_002308_040 Hb_024066_020--Hb_004693_040 Hb_002471_310 Hb_002471_310 Hb_024066_020--Hb_002471_310 Hb_007007_140--Hb_004732_080 Hb_007007_140--Hb_002308_040 Hb_150179_010 Hb_150179_010 Hb_007007_140--Hb_150179_010 Hb_007007_140--Hb_002471_310 Hb_018910_010 Hb_018910_010 Hb_004693_040--Hb_018910_010 Hb_004693_040--Hb_002308_040 Hb_004693_040--Hb_002471_310 Hb_005665_100 Hb_005665_100 Hb_004693_040--Hb_005665_100 Hb_000049_190 Hb_000049_190 Hb_004693_040--Hb_000049_190 Hb_000352_210 Hb_000352_210 Hb_000392_080--Hb_000352_210 Hb_000392_080--Hb_000331_380 Hb_002757_020 Hb_002757_020 Hb_000392_080--Hb_002757_020 Hb_000392_080--Hb_024066_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 9.36043 50.5106 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.52405

CAGE analysis