Hb_000331_380

Information

Type -
Description -
Location Contig331: 304464-304679
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09560g
description hypothetical protein
nr
ID XP_006376890.1
description hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FZH7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09560g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_380 0.0 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
2 Hb_000352_210 0.0357436842 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
3 Hb_000431_050 0.0563498834 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002073_210 0.0574634613 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004396_020 0.0577715209 - - SAUR-like auxin-responsive protein family [Theobroma cacao]
6 Hb_000392_080 0.0595098627 - - hypothetical protein glysoja_034865 [Glycine soja]
7 Hb_007007_140 0.071425184 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
8 Hb_015183_090 0.0748418408 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
9 Hb_151436_010 0.0758751398 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
10 Hb_004732_080 0.0781928001 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
11 Hb_003152_010 0.0799277325 - - -
12 Hb_024066_020 0.0806951685 - - P66 protein [Hevea brasiliensis]
13 Hb_085158_010 0.08244071 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
14 Hb_004162_150 0.0830675466 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
15 Hb_001887_010 0.0847339551 - - mta/sah nucleosidase, putative [Ricinus communis]
16 Hb_001557_030 0.0851538958 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
17 Hb_006970_180 0.0858347503 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
18 Hb_000307_160 0.0876810942 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
19 Hb_150179_010 0.089572339 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
20 Hb_003685_070 0.1000240823 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000331_380 Hb_000331_380 Hb_000352_210 Hb_000352_210 Hb_000331_380--Hb_000352_210 Hb_000431_050 Hb_000431_050 Hb_000331_380--Hb_000431_050 Hb_002073_210 Hb_002073_210 Hb_000331_380--Hb_002073_210 Hb_004396_020 Hb_004396_020 Hb_000331_380--Hb_004396_020 Hb_000392_080 Hb_000392_080 Hb_000331_380--Hb_000392_080 Hb_007007_140 Hb_007007_140 Hb_000331_380--Hb_007007_140 Hb_000352_210--Hb_000392_080 Hb_000352_210--Hb_000431_050 Hb_000352_210--Hb_004396_020 Hb_000352_210--Hb_002073_210 Hb_003152_010 Hb_003152_010 Hb_000352_210--Hb_003152_010 Hb_085158_010 Hb_085158_010 Hb_000431_050--Hb_085158_010 Hb_151436_010 Hb_151436_010 Hb_000431_050--Hb_151436_010 Hb_006970_180 Hb_006970_180 Hb_000431_050--Hb_006970_180 Hb_000431_050--Hb_002073_210 Hb_002073_210--Hb_151436_010 Hb_002073_210--Hb_006970_180 Hb_022250_140 Hb_022250_140 Hb_002073_210--Hb_022250_140 Hb_004396_020--Hb_007007_140 Hb_024066_020 Hb_024066_020 Hb_004396_020--Hb_024066_020 Hb_004732_080 Hb_004732_080 Hb_004396_020--Hb_004732_080 Hb_010327_040 Hb_010327_040 Hb_004396_020--Hb_010327_040 Hb_004396_020--Hb_000392_080 Hb_000392_080--Hb_010327_040 Hb_002757_020 Hb_002757_020 Hb_000392_080--Hb_002757_020 Hb_000392_080--Hb_024066_020 Hb_007007_140--Hb_024066_020 Hb_007007_140--Hb_004732_080 Hb_002308_040 Hb_002308_040 Hb_007007_140--Hb_002308_040 Hb_150179_010 Hb_150179_010 Hb_007007_140--Hb_150179_010 Hb_002471_310 Hb_002471_310 Hb_007007_140--Hb_002471_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 13.6982 163.258 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 9.10169

CAGE analysis