Hb_085158_010

Information

Type transcription factor
Description TF Family: C2H2
Location Contig85158: 710-1273
Sequence    

Annotation

kegg
ID rcu:RCOM_1293650
description TRANSPARENT TESTA 1 protein, putative
nr
ID XP_002526768.1
description TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
swissprot
ID Q9SVY1
description Zinc finger protein WIP2 OS=Arabidopsis thaliana GN=WIP2 PE=1 SV=1
trembl
ID B9SL99
description TRANSPARENT TESTA 1 protein, putative OS=Ricinus communis GN=RCOM_1293650 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein wip2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085158_010 0.0 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
2 Hb_000431_050 0.0290338943 - - conserved hypothetical protein [Ricinus communis]
3 Hb_151436_010 0.0442691842 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
4 Hb_006970_180 0.0544977348 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
5 Hb_006846_050 0.0584449124 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
6 Hb_006603_010 0.0699882919 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
7 Hb_006889_010 0.0701813999 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
8 Hb_005539_330 0.0714491938 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
9 Hb_002073_210 0.0768515172 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000331_380 0.08244071 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
11 Hb_000352_210 0.0835635982 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
12 Hb_004162_150 0.0848283036 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
13 Hb_003152_010 0.0877036412 - - -
14 Hb_015183_090 0.0894125446 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
15 Hb_000431_040 0.0898397709 - - PREDICTED: uncharacterized protein LOC105635551 [Jatropha curcas]
16 Hb_006618_060 0.0927757715 - - PREDICTED: 21 kDa protein [Jatropha curcas]
17 Hb_006570_170 0.0952509877 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
18 Hb_001634_050 0.0955779388 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
19 Hb_000012_340 0.0977729463 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
20 Hb_000905_130 0.0994008199 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]

Gene co-expression network

sample Hb_085158_010 Hb_085158_010 Hb_000431_050 Hb_000431_050 Hb_085158_010--Hb_000431_050 Hb_151436_010 Hb_151436_010 Hb_085158_010--Hb_151436_010 Hb_006970_180 Hb_006970_180 Hb_085158_010--Hb_006970_180 Hb_006846_050 Hb_006846_050 Hb_085158_010--Hb_006846_050 Hb_006603_010 Hb_006603_010 Hb_085158_010--Hb_006603_010 Hb_006889_010 Hb_006889_010 Hb_085158_010--Hb_006889_010 Hb_000431_050--Hb_151436_010 Hb_000331_380 Hb_000331_380 Hb_000431_050--Hb_000331_380 Hb_000431_050--Hb_006970_180 Hb_002073_210 Hb_002073_210 Hb_000431_050--Hb_002073_210 Hb_000352_210 Hb_000352_210 Hb_000431_050--Hb_000352_210 Hb_151436_010--Hb_006970_180 Hb_151436_010--Hb_002073_210 Hb_022250_140 Hb_022250_140 Hb_151436_010--Hb_022250_140 Hb_151436_010--Hb_006603_010 Hb_006970_180--Hb_022250_140 Hb_006970_180--Hb_006603_010 Hb_006970_180--Hb_002073_210 Hb_006618_060 Hb_006618_060 Hb_006846_050--Hb_006618_060 Hb_006846_050--Hb_006603_010 Hb_002232_340 Hb_002232_340 Hb_006846_050--Hb_002232_340 Hb_006846_050--Hb_006970_180 Hb_006846_050--Hb_151436_010 Hb_006603_010--Hb_006618_060 Hb_006603_010--Hb_006889_010 Hb_006889_010--Hb_006970_180 Hb_003152_010 Hb_003152_010 Hb_006889_010--Hb_003152_010 Hb_005539_330 Hb_005539_330 Hb_006889_010--Hb_005539_330 Hb_006889_010--Hb_151436_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0405315 0.261726 4.6427 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.166843

CAGE analysis